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The map label for this gene is 116622366

Identifier: 116622366

GI number: 116622366

Start: 4126377

End: 4127684

Strand: Reverse

Name: 116622366

Synonym: Acid_3260

Alternate gene names: NA

Gene position: 4127684-4126377 (Counterclockwise)

Preceding gene: 116622384

Following gene: 116622365

Centisome position: 41.42

GC content: 59.56

Gene sequence:

>1308_bases
ATGACGCAAGCCGAGCGGGACCGCTTGGTGGCCCTGAAGAAGGCGAAAAAGAAGCTGATCACCCAGAAACAGGCAGCTGA
AGAGCTTGGGATAACAGAACGGCATGTGAGACGGTTGCTGCGGGAGTTGACGCGGCGCGGAGACAAAGTGGTGGCTCACG
GCCTACGAGGACTCCCGTCGAACCGCAAGCTGAATGCTGATACAGAACGAGAGGCGGTGGCCATTCTCTCGCAGCCGGTG
TACCGCGGATTCGGGCCGACCCTGGCAGCGGAGTACCTGGCAAAGAAGCACAAGATCGACGTGAGCCGGGAGACCGTGAG
GCAGTGGATGATCGGAGCAAAATTGTGGCGGGCACGGAAGCAGCGGATCGAGAAGGTACACGAATGGCGACCGCGGCGCA
GTCGCTTCGGGGAGTTGGTGCAGTGGGACACGAGCGATCACGACTGGTTGGAAGGTCGCGGGGAAGAGATCCTGTTGATC
AACATGATCGACGATGCGACTAGCCGATGGTTCGCTCGCTTCGTGAGCAGTGACTCCACGATGGAGAACATGAACCATCT
GGAGCGGTACCTCAAAAAGCACGGGCGGCCGTTGGCCTACTACACCGACAAAGCGGCAATTTTTCAGACGGCGGAGAAGA
CCAAGCGCGATGGCAGCCGATTGGGGAAAAGCCGGGAGGACTTGCCACCGACGCAGATCGGACGCGCTCTCCAAGAGTTG
GGAATCCCGTGGATTGCGGCTCACAGCCCTCAGGCCAAAGGTCGAGTAGAGCGTGGATTTTTGACGGCGCAGGACCGGTT
GGTGAAGGGACTTCGGGTAGCCGGCGTGACCACGTTAGAGGGCGCCAATGACTACCTGGAAACCGAGTTTCTGCCTTGGG
TCAACTCGACGATCGCGGTGGTGCCGGCCAACCCTGACGATGCTCACCGGCCATTGGAGAAGGAACACGATCTTGCGGCG
ATCCTCAGCCACGTAGAGAAGCGGAGGGTGAACGCCGACTACACGTTTCCTTTGGATGCCAAAACCTATCGCATTCTACG
CCAAGATATTTGCACAGGACTCCGGGGAGCCTACATACGCGTGGAGCAGCGTCGGGATGGTTCGGTGGCGGCCCGCTTTA
ACGGACGGTATCTCCGAGTGGAGAGATGCGAGCAGCAGCCCAAGGTAGCGCCTGCCAAACTATCGCCAAAGAAAGCGCCT
CGTCACCCGGCGCAGAAAAGCAGGTGGAACCAGAATTTCGATCTGAAGAAGGGGCCGAAGGTCTGGCAGGCGGCGCAACA
GTCCGAAGCCAGACGCGAGGAATCGTAG

Upstream 100 bases:

>100_bases
AACTTTGTGTCGCCGCAAAATGATAATGTCCTATTTGCGCAAAGTAGAAATGTCCTATTGACGCCTTCAGGCTGGGGAGG
TGGCAGAAGGACAACTATTG

Downstream 100 bases:

>100_bases
TGAGCATGAGACGGCGGAAGTGGCGCGAAGGCAAAGTTCGCCCTATACCGGGAAGCTCTCCGCACGACCGGCTGGTAAGC
CGGGTGATTTCTTCCTCGTT

Product: putative transposase protein, Y4bF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 434

Protein sequence:

>435_residues
MTQAERDRLVALKKAKKKLITQKQAAEELGITERHVRRLLRELTRRGDKVVAHGLRGLPSNRKLNADTEREAVAILSQPV
YRGFGPTLAAEYLAKKHKIDVSRETVRQWMIGAKLWRARKQRIEKVHEWRPRRSRFGELVQWDTSDHDWLEGRGEEILLI
NMIDDATSRWFARFVSSDSTMENMNHLERYLKKHGRPLAYYTDKAAIFQTAEKTKRDGSRLGKSREDLPPTQIGRALQEL
GIPWIAAHSPQAKGRVERGFLTAQDRLVKGLRVAGVTTLEGANDYLETEFLPWVNSTIAVVPANPDDAHRPLEKEHDLAA
ILSHVEKRRVNADYTFPLDAKTYRILRQDICTGLRGAYIRVEQRRDGSVAARFNGRYLRVERCEQQPKVAPAKLSPKKAP
RHPAQKSRWNQNFDLKKGPKVWQAAQQSEARREES

Sequences:

>Translated_435_residues
MTQAERDRLVALKKAKKKLITQKQAAEELGITERHVRRLLRELTRRGDKVVAHGLRGLPSNRKLNADTEREAVAILSQPV
YRGFGPTLAAEYLAKKHKIDVSRETVRQWMIGAKLWRARKQRIEKVHEWRPRRSRFGELVQWDTSDHDWLEGRGEEILLI
NMIDDATSRWFARFVSSDSTMENMNHLERYLKKHGRPLAYYTDKAAIFQTAEKTKRDGSRLGKSREDLPPTQIGRALQEL
GIPWIAAHSPQAKGRVERGFLTAQDRLVKGLRVAGVTTLEGANDYLETEFLPWVNSTIAVVPANPDDAHRPLEKEHDLAA
ILSHVEKRRVNADYTFPLDAKTYRILRQDICTGLRGAYIRVEQRRDGSVAARFNGRYLRVERCEQQPKVAPAKLSPKKAP
RHPAQKSRWNQNFDLKKGPKVWQAAQQSEARREES
>Mature_434_residues
TQAERDRLVALKKAKKKLITQKQAAEELGITERHVRRLLRELTRRGDKVVAHGLRGLPSNRKLNADTEREAVAILSQPVY
RGFGPTLAAEYLAKKHKIDVSRETVRQWMIGAKLWRARKQRIEKVHEWRPRRSRFGELVQWDTSDHDWLEGRGEEILLIN
MIDDATSRWFARFVSSDSTMENMNHLERYLKKHGRPLAYYTDKAAIFQTAEKTKRDGSRLGKSREDLPPTQIGRALQELG
IPWIAAHSPQAKGRVERGFLTAQDRLVKGLRVAGVTTLEGANDYLETEFLPWVNSTIAVVPANPDDAHRPLEKEHDLAAI
LSHVEKRRVNADYTFPLDAKTYRILRQDICTGLRGAYIRVEQRRDGSVAARFNGRYLRVERCEQQPKVAPAKLSPKKAPR
HPAQKSRWNQNFDLKKGPKVWQAAQQSEARREES

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 50072; Mature: 49941

Theoretical pI: Translated: 10.77; Mature: 10.77

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQAERDRLVALKKAKKKLITQKQAAEELGITERHVRRLLRELTRRGDKVVAHGLRGLPS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCC
NRKLNADTEREAVAILSQPVYRGFGPTLAAEYLAKKHKIDVSRETVRQWMIGAKLWRARK
CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
QRIEKVHEWRPRRSRFGELVQWDTSDHDWLEGRGEEILLINMIDDATSRWFARFVSSDST
HHHHHHHHCCCHHHHHHHHEECCCCCCHHHCCCCCEEEEEEECHHHHHHHHHHHHCCCHH
MENMNHLERYLKKHGRPLAYYTDKAAIFQTAEKTKRDGSRLGKSREDLPPTQIGRALQEL
HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
GIPWIAAHSPQAKGRVERGFLTAQDRLVKGLRVAGVTTLEGANDYLETEFLPWVNSTIAV
CCCEEECCCCCCCCCHHHCCHHHHHHHHHHHHHCCEEEECCCCHHHHHHHCCCCCCEEEE
VPANPDDAHRPLEKEHDLAAILSHVEKRRVNADYTFPLDAKTYRILRQDICTGLRGAYIR
EECCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE
VEQRRDGSVAARFNGRYLRVERCEQQPKVAPAKLSPKKAPRHPAQKSRWNQNFDLKKGPK
EEECCCCCEEEEECCCEEEHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCH
VWQAAQQSEARREES
HHHHHHHHHHHCCCC
>Mature Secondary Structure 
TQAERDRLVALKKAKKKLITQKQAAEELGITERHVRRLLRELTRRGDKVVAHGLRGLPS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCC
NRKLNADTEREAVAILSQPVYRGFGPTLAAEYLAKKHKIDVSRETVRQWMIGAKLWRARK
CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
QRIEKVHEWRPRRSRFGELVQWDTSDHDWLEGRGEEILLINMIDDATSRWFARFVSSDST
HHHHHHHHCCCHHHHHHHHEECCCCCCHHHCCCCCEEEEEEECHHHHHHHHHHHHCCCHH
MENMNHLERYLKKHGRPLAYYTDKAAIFQTAEKTKRDGSRLGKSREDLPPTQIGRALQEL
HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
GIPWIAAHSPQAKGRVERGFLTAQDRLVKGLRVAGVTTLEGANDYLETEFLPWVNSTIAV
CCCEEECCCCCCCCCHHHCCHHHHHHHHHHHHHCCEEEECCCCHHHHHHHCCCCCCEEEE
VPANPDDAHRPLEKEHDLAAILSHVEKRRVNADYTFPLDAKTYRILRQDICTGLRGAYIR
EECCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE
VEQRRDGSVAARFNGRYLRVERCEQQPKVAPAKLSPKKAPRHPAQKSRWNQNFDLKKGPK
EEECCCCCEEEEECCCEEEHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCH
VWQAAQQSEARREES
HHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]