Click here to switch to the map view.

The map label for this gene is ykfC [H]

Identifier: 116621135

GI number: 116621135

Start: 2550848

End: 2552359

Strand: Direct

Name: ykfC [H]

Synonym: Acid_2016

Alternate gene names: 116621135

Gene position: 2550848-2552359 (Clockwise)

Preceding gene: 116621132

Following gene: 116621141

Centisome position: 25.6

GC content: 58.27

Gene sequence:

>1512_bases
ATGAGCGATAAGTCCACCATGGACGGCGATGGGGAGTCGTACAGCGGCGTAGTACCAGCGAAGCAGCCGAACAAGAGCGG
GAAACCGCAGGCGGAGGTTGTGGAGGAAAGGCCGCTGGCCAAGGAGAACACGGAACAGTCTAACCCGGGCCGGACGCAGA
GACGGGGAAGCGGGACAAGCGGGCTGGAACGTGTGCGGGAAGTAGCGAAGAAGGATGGGAAGGTGCGGTTCACGGCCCTA
CTCCATCACGTGACGGTCGATCTGCTACGGGATAGTTATCACAGCCTGAAGAAAAAGGCTGCGCCAGGAGTGGACGGAGT
GACGTGGCGAGAGTATGGAGAAGGCCTGGAGGCGCGAATCGGCGACCTGCACGGGCGAATCCAACGGGGGGCCTATCAAG
CGCAGCCATCGAGGCGAGTCTGGATACCGAAAACCGACGGGCGGCAACGACCGTTGGGGATCGCGGCGCTGGAGGACAAA
ATCGTCCAGCACGCGGTAGGAAGGGTCCTCAACCAGATATGGGAAGAGGATTTTCTGGGATTCTCGTATGGGTACCGGCC
GGGGCGCAATCAACATGATGCACTGGATGCGCTGTCGGTAGGGATAATGCGCAAGAAGGTGAACTGGGTGCTCGATTTGG
ACGTGCGGTCATTTTTCGACAAGGTCGATCATAAATGGCTGGTGCAGTTCGTAGAGCATCGGATAGCAGATCCACGGATC
GTGCGCCTGATCCAGAAATGGCTGAAGGCGGGCGTGATGGAAGATGGCCGGTGGTTTGAGACAGAGGAAGGGACTCCGCA
AGGGTCGGTGATCTCGCCGAGTCTTGCCAATCTCTACCTGCACCATGTACTCGATCTCTGGGTGGAGGCATGGCGAAAGA
AGATAGCCAAGGGCGATGTGATCGTCGTGCGCTATGCGGATGAGGCTGTGCTGGGGTTCCAGTACCGGGAAGAAGCCGAA
GGGTTCCTGAAAGAGTTGCAGGAGCGGGTGGCGAAATTCGGACTGGAACTGCACCCGGAGAAGACGCGCCTGATAGAGTT
TGGGCGATATGCCACCGAGCGCCGGGAGAAGCGTGGGGAAGGAAAGCCGGAGACTTTTAACTTTTTGGGTTTCACCCACA
TCTGTGGGACGAGCCAGCCGAAGGGCTATTTCACGGTACGACGGAAAACGATCGGCAAGCGCATGGCAGCCAAACTGAAG
GAAATTCGGGAGAAGCTGCGACAGCGGATGCACGAGAACATCGGCGGAACGTTGAAGTGGTTACAGACGGTGGTGAGGGG
GTATTTCCAATACCATGCGGTGCCTGGAAACGAGGAGCGACTGAAGGCGTTTCTGCACGAAGTGAGGCGAAACTGGCTGC
GGATGCTACGGCGACGAAGCCAGCGGACTCGCTGGACGTGGGAGCGATTCATGGAGCGACTTGGCGTCTTGCTACCTGCG
ATTGAAATCCAACATCCGTATCCGACAGAGCGCTTCGACGCCAAACATCCAAGGCAAGAACCGTGTGCGTGA

Upstream 100 bases:

>100_bases
AGTCGAAGACCCCAAGCACGCATAGAAACTCCAAGCGCGAGAACCGAGAGACCCCATGGCCGCCCGCGGTCGAAAGGCGG
CGGGCCGGGAGGAGAAAGCG

Downstream 100 bases:

>100_bases
GTCGCGCCAGCACGGGACTGTGCGGGGGGTGTCGGGCAACCGGCATCCCTACCGCGACCCGCCGGCTTTCAGCCGGCGTC
TCGCCCTGGCACGATTGCCC

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 503; Mature: 502

Protein sequence:

>503_residues
MSDKSTMDGDGESYSGVVPAKQPNKSGKPQAEVVEERPLAKENTEQSNPGRTQRRGSGTSGLERVREVAKKDGKVRFTAL
LHHVTVDLLRDSYHSLKKKAAPGVDGVTWREYGEGLEARIGDLHGRIQRGAYQAQPSRRVWIPKTDGRQRPLGIAALEDK
IVQHAVGRVLNQIWEEDFLGFSYGYRPGRNQHDALDALSVGIMRKKVNWVLDLDVRSFFDKVDHKWLVQFVEHRIADPRI
VRLIQKWLKAGVMEDGRWFETEEGTPQGSVISPSLANLYLHHVLDLWVEAWRKKIAKGDVIVVRYADEAVLGFQYREEAE
GFLKELQERVAKFGLELHPEKTRLIEFGRYATERREKRGEGKPETFNFLGFTHICGTSQPKGYFTVRRKTIGKRMAAKLK
EIREKLRQRMHENIGGTLKWLQTVVRGYFQYHAVPGNEERLKAFLHEVRRNWLRMLRRRSQRTRWTWERFMERLGVLLPA
IEIQHPYPTERFDAKHPRQEPCA

Sequences:

>Translated_503_residues
MSDKSTMDGDGESYSGVVPAKQPNKSGKPQAEVVEERPLAKENTEQSNPGRTQRRGSGTSGLERVREVAKKDGKVRFTAL
LHHVTVDLLRDSYHSLKKKAAPGVDGVTWREYGEGLEARIGDLHGRIQRGAYQAQPSRRVWIPKTDGRQRPLGIAALEDK
IVQHAVGRVLNQIWEEDFLGFSYGYRPGRNQHDALDALSVGIMRKKVNWVLDLDVRSFFDKVDHKWLVQFVEHRIADPRI
VRLIQKWLKAGVMEDGRWFETEEGTPQGSVISPSLANLYLHHVLDLWVEAWRKKIAKGDVIVVRYADEAVLGFQYREEAE
GFLKELQERVAKFGLELHPEKTRLIEFGRYATERREKRGEGKPETFNFLGFTHICGTSQPKGYFTVRRKTIGKRMAAKLK
EIREKLRQRMHENIGGTLKWLQTVVRGYFQYHAVPGNEERLKAFLHEVRRNWLRMLRRRSQRTRWTWERFMERLGVLLPA
IEIQHPYPTERFDAKHPRQEPCA
>Mature_502_residues
SDKSTMDGDGESYSGVVPAKQPNKSGKPQAEVVEERPLAKENTEQSNPGRTQRRGSGTSGLERVREVAKKDGKVRFTALL
HHVTVDLLRDSYHSLKKKAAPGVDGVTWREYGEGLEARIGDLHGRIQRGAYQAQPSRRVWIPKTDGRQRPLGIAALEDKI
VQHAVGRVLNQIWEEDFLGFSYGYRPGRNQHDALDALSVGIMRKKVNWVLDLDVRSFFDKVDHKWLVQFVEHRIADPRIV
RLIQKWLKAGVMEDGRWFETEEGTPQGSVISPSLANLYLHHVLDLWVEAWRKKIAKGDVIVVRYADEAVLGFQYREEAEG
FLKELQERVAKFGLELHPEKTRLIEFGRYATERREKRGEGKPETFNFLGFTHICGTSQPKGYFTVRRKTIGKRMAAKLKE
IREKLRQRMHENIGGTLKWLQTVVRGYFQYHAVPGNEERLKAFLHEVRRNWLRMLRRRSQRTRWTWERFMERLGVLLPAI
EIQHPYPTERFDAKHPRQEPCA

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226520, Length=489, Percent_Identity=24.3353783231084, Blast_Score=107, Evalue=4e-24,
Organism=Saccharomyces cerevisiae, GI6226521, Length=213, Percent_Identity=30.9859154929577, Blast_Score=107, Evalue=5e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 58325; Mature: 58194

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SDKSTMDGDGESYSGVVPAKQPNKSGKPQAEVVEERPLAKENTEQSNPGRTQRRGSGTS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCH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HCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]