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The map label for this gene is 116620987

Identifier: 116620987

GI number: 116620987

Start: 2325525

End: 2326502

Strand: Reverse

Name: 116620987

Synonym: Acid_1868

Alternate gene names: NA

Gene position: 2326502-2325525 (Counterclockwise)

Preceding gene: 116620989

Following gene: 116620986

Centisome position: 23.35

GC content: 64.31

Gene sequence:

>978_bases
ATGTCAACGACCATTCGGCAGCGAGTGGGCGGAGTCCTGGCACTGCTGGTGTTTCCCCTGGCGACGTTCGCGGCAGACGA
ACGCACCTGCACCATGCGTGACGCGGCTTTACCCACAAATGCGATTACCTACGTGCTCTGCGAAGAGGGACTGCTGCTCG
TCACCAACAACGACGGCGGTACCTGGGCGCAGCGCAAAATTCCAAACGTCAGCGGCCTTCGCGCCCTCGCGTTCGGCGAT
GAAAACCGCGGCCTCGCGATCGGCGAAGGCGGCGTCATCGTCGCCACGTCCGACGCCGGACGCACCTGGCAGAAGCGCCC
CTCCGCCACTACCGAGAACCTCACCGATATCCAGATGATCGGCGATGAAGGCTGGATCGCGGGCTTCGATGGCGTCATCC
TCCACACCTCCGACGGCGGCAAAACCTGGAGCAAACAGGAGAGCGGTGTCACTCTCTCGCTCGAGACGCTTTACTTCCTC
GACCCGCAAAACGGCTGGGCCGCCGGATGGGCGGGCCTCGTCCTGCATACCGTCGATGGAGGCAAGAAGTGGCAGATCGT
CAAGGTTCCCGGCGCCAGCTGGTCGCTCAGTTCCATCGCGTTCAGGGACGCGAAGGATGGCTGGATCTCCGGTTTCGCCG
GCCAGCTCTTCCACACCAGGGACGGCGGCGCCACTTGGGAATCCAAGACCACGCCCTACTCCGGCTGGCTCACCTCCATC
GGCTTCGATGGCGCCAATCGCGGCTGGATCACCACCGACGATGGCTTTCTGATGAGCACCGATGCCGGCGAAACCTGGAA
GCCGCAGCCCACCGAAACCCAGTTCTTCCTGAACAAGCTGCTCAGCGCCAACGGCTCCGCCTGGGCGCTCGGCCCCTTCG
GCCTCGTCAAGCAGACCGGCACCGGCATCGCGTGGAAGCGCATCGCCAACCCTCTCGCCGGCAACGCCGACGCCGAAGAA
GCCAAATCCCAGCGGTAA

Upstream 100 bases:

>100_bases
TTTACTGCCGCATGGGCCTAATTAGGCTCGAATTGGCCCCCGCCGGAGTGTAACCTTTTGAGCCATTCAAACGTAACCCT
GTTGATCCGAGGAGATTGGA

Downstream 100 bases:

>100_bases
CAATGCCGTGTCGTTTTAGTAGAATGTGTAAGCGCTTTCCAGGAGGCATATTTGAGGTCGGCGGACGTCATTATCATTGG
GGCCGGGATTGTCGGTTCGA

Product: BNR repeat-containing glycosyl hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 324

Protein sequence:

>325_residues
MSTTIRQRVGGVLALLVFPLATFAADERTCTMRDAALPTNAITYVLCEEGLLLVTNNDGGTWAQRKIPNVSGLRALAFGD
ENRGLAIGEGGVIVATSDAGRTWQKRPSATTENLTDIQMIGDEGWIAGFDGVILHTSDGGKTWSKQESGVTLSLETLYFL
DPQNGWAAGWAGLVLHTVDGGKKWQIVKVPGASWSLSSIAFRDAKDGWISGFAGQLFHTRDGGATWESKTTPYSGWLTSI
GFDGANRGWITTDDGFLMSTDAGETWKPQPTETQFFLNKLLSANGSAWALGPFGLVKQTGTGIAWKRIANPLAGNADAEE
AKSQR

Sequences:

>Translated_325_residues
MSTTIRQRVGGVLALLVFPLATFAADERTCTMRDAALPTNAITYVLCEEGLLLVTNNDGGTWAQRKIPNVSGLRALAFGD
ENRGLAIGEGGVIVATSDAGRTWQKRPSATTENLTDIQMIGDEGWIAGFDGVILHTSDGGKTWSKQESGVTLSLETLYFL
DPQNGWAAGWAGLVLHTVDGGKKWQIVKVPGASWSLSSIAFRDAKDGWISGFAGQLFHTRDGGATWESKTTPYSGWLTSI
GFDGANRGWITTDDGFLMSTDAGETWKPQPTETQFFLNKLLSANGSAWALGPFGLVKQTGTGIAWKRIANPLAGNADAEE
AKSQR
>Mature_324_residues
STTIRQRVGGVLALLVFPLATFAADERTCTMRDAALPTNAITYVLCEEGLLLVTNNDGGTWAQRKIPNVSGLRALAFGDE
NRGLAIGEGGVIVATSDAGRTWQKRPSATTENLTDIQMIGDEGWIAGFDGVILHTSDGGKTWSKQESGVTLSLETLYFLD
PQNGWAAGWAGLVLHTVDGGKKWQIVKVPGASWSLSSIAFRDAKDGWISGFAGQLFHTRDGGATWESKTTPYSGWLTSIG
FDGANRGWITTDDGFLMSTDAGETWKPQPTETQFFLNKLLSANGSAWALGPFGLVKQTGTGIAWKRIANPLAGNADAEEA
KSQR

Specific function: Unknown. The ortholog in A.thaliana is involved in photosystem II (PSII) assembly, but knockout of the corresponding gene in Synechoccus PCC 7002 has no effect on PSII activity [H]

COG id: COG4447

COG function: function code R; Uncharacterized protein related to plant photosystem II stability/assembly factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 BNR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002860
- InterPro:   IPR016705
- InterPro:   IPR015943 [H]

Pfam domain/function: PF02012 BNR [H]

EC number: NA

Molecular weight: Translated: 34789; Mature: 34658

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTTIRQRVGGVLALLVFPLATFAADERTCTMRDAALPTNAITYVLCEEGLLLVTNNDGG
CCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEECCCEEEEECCCCC
TWAQRKIPNVSGLRALAFGDENRGLAIGEGGVIVATSDAGRTWQKRPSATTENLTDIQMI
CCHHHCCCCCCCEEEEEECCCCCCEEEECCCEEEEECCCCCCHHCCCCCCCCCCCEEEEE
GDEGWIAGFDGVILHTSDGGKTWSKQESGVTLSLETLYFLDPQNGWAAGWAGLVLHTVDG
CCCCCEECCCCEEEEECCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEEEEEEECC
GKKWQIVKVPGASWSLSSIAFRDAKDGWISGFAGQLFHTRDGGATWESKTTPYSGWLTSI
CCEEEEEEECCCCCCHHHEEEECCCCCHHCCCCCCEEEECCCCCCCCCCCCCCCCCCEEE
GFDGANRGWITTDDGFLMSTDAGETWKPQPTETQFFLNKLLSANGSAWALGPFGLVKQTG
CCCCCCCCEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCHHHHCCC
TGIAWKRIANPLAGNADAEEAKSQR
CCEEHHHHCCCCCCCCCHHHHHCCC
>Mature Secondary Structure 
STTIRQRVGGVLALLVFPLATFAADERTCTMRDAALPTNAITYVLCEEGLLLVTNNDGG
CCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEECCCEEEEECCCCC
TWAQRKIPNVSGLRALAFGDENRGLAIGEGGVIVATSDAGRTWQKRPSATTENLTDIQMI
CCHHHCCCCCCCEEEEEECCCCCCEEEECCCEEEEECCCCCCHHCCCCCCCCCCCEEEEE
GDEGWIAGFDGVILHTSDGGKTWSKQESGVTLSLETLYFLDPQNGWAAGWAGLVLHTVDG
CCCCCEECCCCEEEEECCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEEEEEEECC
GKKWQIVKVPGASWSLSSIAFRDAKDGWISGFAGQLFHTRDGGATWESKTTPYSGWLTSI
CCEEEEEEECCCCCCHHHEEEECCCCCHHCCCCCCEEEECCCCCCCCCCCCCCCCCCEEE
GFDGANRGWITTDDGFLMSTDAGETWKPQPTETQFFLNKLLSANGSAWALGPFGLVKQTG
CCCCCCCCEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCHHHHCCC
TGIAWKRIANPLAGNADAEEAKSQR
CCEEHHHHCCCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12917486 [H]