Click here to switch to the map view.

The map label for this gene is crtB [H]

Identifier: 116620388

GI number: 116620388

Start: 1564303

End: 1565241

Strand: Direct

Name: crtB [H]

Synonym: Acid_1265

Alternate gene names: 116620388

Gene position: 1564303-1565241 (Clockwise)

Preceding gene: 116620387

Following gene: 116620389

Centisome position: 15.7

GC content: 63.79

Gene sequence:

>939_bases
ATGTCCGGCGTGGGCTCACCCGCGTTTCTGCCGCCGGCGAATTTCGTCAGGTCGCCGGAACTGCTCAATAAGCAATGGTC
GGCCGAGGAAGGACGCGCTTACACGCGCTGGCTTGCCACCAATCACTACGAGAACTTCCACGTCGTCAGCTTTCTCCTAC
CCAAGCGGCTGCACCAGGATTTCTATAACGTCTATGCATACTGCCGGTGGGCCGACGATCTGGCGGACGAGATCGGCGAC
CCTGCGGAGAGCCTCCGGCTGCTGACGTGGTGGCGGGGCGAACTGGACGCGATGTACGAGGGCCGGGCCACGCATCCGGT
GCTCGCCGCGCTCGCGCCTACCGTGCAGCGGTACGGGATTCCGCGAACGCCGTTTTCGGATCTGATCGACGCCTTCGTAC
AGGATCAGACCGTGACGCGGTACCGGGATTGGGAGGAATTGTTCGGGTACTGCCGCAACTCCGCGAACCCCGTGGGGCGG
CTGGTGCTGTACTTGTGCGGGTACAGCGATGCAGAGCGGCAGCAACTAAGCGACGCCACCTGCACGGCGTTGCAGTTGGC
CAATTTCTGGCAGGACGTGACCGTAGACCTGTTGAAAGATCGCGTATACCTGCCCCTAGCGCTTCTGGAGAAACACGGCT
GCACGGTGGAGCAAGTCTTCAACCGGCAGTTCACGCCGGGCTTCGCCGCGGCGATGCGTGAGGCCGTGGAGAAAGCGCGC
GGGCTATTTCATGCCGGCCTGCCGCTGACCAGGATGGTGGACCGACGCCTTGCGATCGATCTGGACCTCTTCAGCCGCGG
CGGAATGCGAGTGCTGGAAAAGATCGAACAACAGGGTTACGATGTGCTGCGCGCGCGTCCGGCGGTATCGAAAGTGGAGC
GGGTCGCGCTGCTGGTGGCATCGGTGGCGCGCGTGGCGTTCTCCGGCCGGGCGGCATGA

Upstream 100 bases:

>100_bases
GTATTCGTCAACAAGGAAGAGCCGTTGGCCAATCTCCTCGAAGTGATGCGGCACCTGATGAGCCACAACGGCCACCTGAA
GACGGCGATCGTTCCGTAGA

Downstream 100 bases:

>100_bases
TGATCACGATCGACGAATCCTACGAGTATTGCCTGCGCGTAGCGCGCACGCGCGCCAAGAATTTCTACTACTCGTTCGTG
CTGCTCTCCACCCAGCAGCG

Product: squalene/phytoene synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MSGVGSPAFLPPANFVRSPELLNKQWSAEEGRAYTRWLATNHYENFHVVSFLLPKRLHQDFYNVYAYCRWADDLADEIGD
PAESLRLLTWWRGELDAMYEGRATHPVLAALAPTVQRYGIPRTPFSDLIDAFVQDQTVTRYRDWEELFGYCRNSANPVGR
LVLYLCGYSDAERQQLSDATCTALQLANFWQDVTVDLLKDRVYLPLALLEKHGCTVEQVFNRQFTPGFAAAMREAVEKAR
GLFHAGLPLTRMVDRRLAIDLDLFSRGGMRVLEKIEQQGYDVLRARPAVSKVERVALLVASVARVAFSGRAA

Sequences:

>Translated_312_residues
MSGVGSPAFLPPANFVRSPELLNKQWSAEEGRAYTRWLATNHYENFHVVSFLLPKRLHQDFYNVYAYCRWADDLADEIGD
PAESLRLLTWWRGELDAMYEGRATHPVLAALAPTVQRYGIPRTPFSDLIDAFVQDQTVTRYRDWEELFGYCRNSANPVGR
LVLYLCGYSDAERQQLSDATCTALQLANFWQDVTVDLLKDRVYLPLALLEKHGCTVEQVFNRQFTPGFAAAMREAVEKAR
GLFHAGLPLTRMVDRRLAIDLDLFSRGGMRVLEKIEQQGYDVLRARPAVSKVERVALLVASVARVAFSGRAA
>Mature_311_residues
SGVGSPAFLPPANFVRSPELLNKQWSAEEGRAYTRWLATNHYENFHVVSFLLPKRLHQDFYNVYAYCRWADDLADEIGDP
AESLRLLTWWRGELDAMYEGRATHPVLAALAPTVQRYGIPRTPFSDLIDAFVQDQTVTRYRDWEELFGYCRNSANPVGRL
VLYLCGYSDAERQQLSDATCTALQLANFWQDVTVDLLKDRVYLPLALLEKHGCTVEQVFNRQFTPGFAAAMREAVEKARG
LFHAGLPLTRMVDRRLAIDLDLFSRGGMRVLEKIEQQGYDVLRARPAVSKVERVALLVASVARVAFSGRAA

Specific function: Catalyzes the reaction from prephytoene diphosphate to phytoene [H]

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phytoene/squalene synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002060
- InterPro:   IPR019845
- InterPro:   IPR008949 [H]

Pfam domain/function: PF00494 SQS_PSY [H]

EC number: =2.5.1.32 [H]

Molecular weight: Translated: 35396; Mature: 35265

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGVGSPAFLPPANFVRSPELLNKQWSAEEGRAYTRWLATNHYENFHVVSFLLPKRLHQD
CCCCCCCCCCCCHHHHCCHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH
FYNVYAYCRWADDLADEIGDPAESLRLLTWWRGELDAMYEGRATHPVLAALAPTVQRYGI
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHCCC
PRTPFSDLIDAFVQDQTVTRYRDWEELFGYCRNSANPVGRLVLYLCGYSDAERQQLSDAT
CCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
CTALQLANFWQDVTVDLLKDRVYLPLALLEKHGCTVEQVFNRQFTPGFAAAMREAVEKAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHH
GLFHAGLPLTRMVDRRLAIDLDLFSRGGMRVLEKIEQQGYDVLRARPAVSKVERVALLVA
HHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHH
SVARVAFSGRAA
HHHHHHHCCCCC
>Mature Secondary Structure 
SGVGSPAFLPPANFVRSPELLNKQWSAEEGRAYTRWLATNHYENFHVVSFLLPKRLHQD
CCCCCCCCCCCHHHHCCHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH
FYNVYAYCRWADDLADEIGDPAESLRLLTWWRGELDAMYEGRATHPVLAALAPTVQRYGI
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHCCC
PRTPFSDLIDAFVQDQTVTRYRDWEELFGYCRNSANPVGRLVLYLCGYSDAERQQLSDAT
CCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
CTALQLANFWQDVTVDLLKDRVYLPLALLEKHGCTVEQVFNRQFTPGFAAAMREAVEKAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHH
GLFHAGLPLTRMVDRRLAIDLDLFSRGGMRVLEKIEQQGYDVLRARPAVSKVERVALLVA
HHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHH
SVARVAFSGRAA
HHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8215386 [H]