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The map label for this gene is crtB [H]

Identifier: 116620389

GI number: 116620389

Start: 1565238

End: 1566077

Strand: Direct

Name: crtB [H]

Synonym: Acid_1266

Alternate gene names: 116620389

Gene position: 1565238-1566077 (Clockwise)

Preceding gene: 116620388

Following gene: 116620393

Centisome position: 15.71

GC content: 60.83

Gene sequence:

>840_bases
ATGATGATCACGATCGACGAATCCTACGAGTATTGCCTGCGCGTAGCGCGCACGCGCGCCAAGAATTTCTACTACTCGTT
CGTGCTGCTCTCCACCCAGCAGCGGAAAGCGATGTGCGCGATCTACGCCTTTATGCGCTACTGCGACGACCTGAGCGACG
AGCCGGGGGCGTCCAAGGCGGCTGTGGATCGTTGGCGGGCGGACCTGGAGCAGGCGCTCGAAGGGCGGTTCACGGACCAC
CCGGTATGGCCGGCATTCCACCACACCGTGCGCCGGTTCGGCATTCCTCACGAGTATTTCCGGCAGATGATCGACGGCAT
CCAGAGCGACCTGGAGCCGCGGCGCCTGGAGACGTTCGAGGAACTGTATCTCTACTGCTACCGGGTCGCGTCGGTGGTTG
GCCTGACGATCATTCACATCTTCGGCTTCGATACGCGCAGCGCTCTCCCGCTGGCGGAGAAGTGCGGAGTCGCATTTCAA
TTGACGAACATACTGCGCGACATTCAGGAAGACGCCGCGCTCGGCCGGATCTATATTCCCGCCGAGGATCTGCGGCGTTT
CGGGGTGACGGAAGAGGATTTGCGCGCGGGTAAGCGGAGTCCGGAATTTCTCGAGCTGATGCGCTTTGAAGCGGCGCGGG
CGCGGACCTATTACAACGAATCGCTGCCGTTGCTGGAATTGATTCATCCGCGCAGCCGGAGCTCGCTGTGGGCGCTGATT
TCGATCTACTCCCGCCTGCTGGAGCGCATCGTGAGCAAGAACTACGACGTGTTCACGCGCCGGGTGCGGTTGAATCTCTT
CGAGAAGAGCTGGATCGTAGTGAAGGCGATGGTGAGCTAA

Upstream 100 bases:

>100_bases
GTTACGATGTGCTGCGCGCGCGTCCGGCGGTATCGAAAGTGGAGCGGGTCGCGCTGCTGGTGGCATCGGTGGCGCGCGTG
GCGTTCTCCGGCCGGGCGGC

Downstream 100 bases:

>100_bases
CAACCGCGCCAACGAGCCGCGACCGTGAGGGAGCGCTACCCGCAGACCACGTCTCTGGGTGGACGCCCCACGGGGCAGCG
GAGCCGCAGTCAGGAATCGA

Product: farnesyl-diphosphate farnesyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MMITIDESYEYCLRVARTRAKNFYYSFVLLSTQQRKAMCAIYAFMRYCDDLSDEPGASKAAVDRWRADLEQALEGRFTDH
PVWPAFHHTVRRFGIPHEYFRQMIDGIQSDLEPRRLETFEELYLYCYRVASVVGLTIIHIFGFDTRSALPLAEKCGVAFQ
LTNILRDIQEDAALGRIYIPAEDLRRFGVTEEDLRAGKRSPEFLELMRFEAARARTYYNESLPLLELIHPRSRSSLWALI
SIYSRLLERIVSKNYDVFTRRVRLNLFEKSWIVVKAMVS

Sequences:

>Translated_279_residues
MMITIDESYEYCLRVARTRAKNFYYSFVLLSTQQRKAMCAIYAFMRYCDDLSDEPGASKAAVDRWRADLEQALEGRFTDH
PVWPAFHHTVRRFGIPHEYFRQMIDGIQSDLEPRRLETFEELYLYCYRVASVVGLTIIHIFGFDTRSALPLAEKCGVAFQ
LTNILRDIQEDAALGRIYIPAEDLRRFGVTEEDLRAGKRSPEFLELMRFEAARARTYYNESLPLLELIHPRSRSSLWALI
SIYSRLLERIVSKNYDVFTRRVRLNLFEKSWIVVKAMVS
>Mature_279_residues
MMITIDESYEYCLRVARTRAKNFYYSFVLLSTQQRKAMCAIYAFMRYCDDLSDEPGASKAAVDRWRADLEQALEGRFTDH
PVWPAFHHTVRRFGIPHEYFRQMIDGIQSDLEPRRLETFEELYLYCYRVASVVGLTIIHIFGFDTRSALPLAEKCGVAFQ
LTNILRDIQEDAALGRIYIPAEDLRRFGVTEEDLRAGKRSPEFLELMRFEAARARTYYNESLPLLELIHPRSRSSLWALI
SIYSRLLERIVSKNYDVFTRRVRLNLFEKSWIVVKAMVS

Specific function: Catalyzes the reaction from prephytoene diphosphate to phytoene [H]

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phytoene/squalene synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002060
- InterPro:   IPR019845
- InterPro:   IPR008949 [H]

Pfam domain/function: PF00494 SQS_PSY [H]

EC number: =2.5.1.32 [H]

Molecular weight: Translated: 32770; Mature: 32770

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMITIDESYEYCLRVARTRAKNFYYSFVLLSTQQRKAMCAIYAFMRYCDDLSDEPGASKA
CEEEECCHHHHHHHHHHHHHHHHHEEHEEEECHHHHHHHHHHHHHHHHHCCCCCCCCHHH
AVDRWRADLEQALEGRFTDHPVWPAFHHTVRRFGIPHEYFRQMIDGIQSDLEPRRLETFE
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHH
ELYLYCYRVASVVGLTIIHIFGFDTRSALPLAEKCGVAFQLTNILRDIQEDAALGRIYIP
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCCEEEEC
AEDLRRFGVTEEDLRAGKRSPEFLELMRFEAARARTYYNESLPLLELIHPRSRSSLWALI
HHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHH
SIYSRLLERIVSKNYDVFTRRVRLNLFEKSWIVVKAMVS
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEEECC
>Mature Secondary Structure
MMITIDESYEYCLRVARTRAKNFYYSFVLLSTQQRKAMCAIYAFMRYCDDLSDEPGASKA
CEEEECCHHHHHHHHHHHHHHHHHEEHEEEECHHHHHHHHHHHHHHHHHCCCCCCCCHHH
AVDRWRADLEQALEGRFTDHPVWPAFHHTVRRFGIPHEYFRQMIDGIQSDLEPRRLETFE
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHH
ELYLYCYRVASVVGLTIIHIFGFDTRSALPLAEKCGVAFQLTNILRDIQEDAALGRIYIP
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCCEEEEC
AEDLRRFGVTEEDLRAGKRSPEFLELMRFEAARARTYYNESLPLLELIHPRSRSSLWALI
HHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHH
SIYSRLLERIVSKNYDVFTRRVRLNLFEKSWIVVKAMVS
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA