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The map label for this gene is opuCC [H]

Identifier: 116620326

GI number: 116620326

Start: 1485672

End: 1486517

Strand: Reverse

Name: opuCC [H]

Synonym: Acid_1203

Alternate gene names: 116620326

Gene position: 1486517-1485672 (Counterclockwise)

Preceding gene: 116620327

Following gene: 116620324

Centisome position: 14.92

GC content: 64.89

Gene sequence:

>846_bases
GTGGGATTGGGCGGGTGCGGGACCAAGCCCGAGATCGTGGTGGGGTCTAAGAATTTCACCGAGCAGGTGCTGCTGGGTGA
GATTCTGGCGCAGCACATCGAACGCCGGCTGCACGTGACTGTGGGGCGGAAGTTCAACCTGGGCGGCACGCTGCTGGCGC
AGGCGGCGATCACGAGCGGGGCGATCGACCTGTATCCGGAATACAGCGGGACAGCGTTGACGGCGGTGCTGAAGCTGCCG
CCCTCTAAGGACGCCGGGGCGGTGATGCAGCAGGTGCGCGATGGCTATCGACGGCAGTGGGGATTGGAATGGCTGCCGCC
GCTCGGGTTCAACAACACGTTCGCGATGATGGTCCGCGGCGATATCGCACGGCCGACGGGGATCAAGACGCTGACGGACG
CGGCGCGGCTGCAGGCATGGAAACTGGGCGCGGGATACGAGTTCAAGCAGCGGACAGACGGGCTGGCAGGGCTGCTTGCG
ACCTACGGCCTACGGACGGATGGGGAGCCGGTGACGATGGACCTGGGGCTGCTTTATGCGGCACTGAAGAGCCGGAAGGT
GGACATGATCGCGGCGAATTCGACGGACGGGCTGGCGGCGGTGCTCGATGTGAAGATGCTGGAAGACGACCGGCACTACT
TCCCTCCGTACGAGTGCGCAGTGGTAGCGCGCGCAGAATCGCTGGCGCGGCATGCGGGGCTGCGCGAGGCGCTGGCGGAA
GTCTCGGGTAAGTTGAATGACGCGACGATGCGCAAGTTGAATTTCGGAGTGGACGGGGAACACCGTCCGCCGGCGCAAGT
GGCGGGGCAGTTTCTGGATGCGACATTCGGGAAGACGTCAAGGTAA

Upstream 100 bases:

>100_bases
TGTTGGCGGGAGCGCTGCCGGCTGCTTTAATGGCGCTGGCGGCGGACGGGGGACTTGCATGGATCGAGCGAAGACTCTCG
CCGGGCTGATCGCGCTGGCG

Downstream 100 bases:

>100_bases
CCCCTGATATCGTTACCTATCTGGTACAAATGAGCCTTTGAGCGTTATATTTGGCTGGTGCACAATCAGGGCAGTTCCAT
GTTACGTGCCTTATCCATGT

Product: substrate-binding region of ABC-type glycine betaine transporter

Products: NA

Alternate protein names: Osmoprotectant-binding protein [H]

Number of amino acids: Translated: 281; Mature: 280

Protein sequence:

>281_residues
MGLGGCGTKPEIVVGSKNFTEQVLLGEILAQHIERRLHVTVGRKFNLGGTLLAQAAITSGAIDLYPEYSGTALTAVLKLP
PSKDAGAVMQQVRDGYRRQWGLEWLPPLGFNNTFAMMVRGDIARPTGIKTLTDAARLQAWKLGAGYEFKQRTDGLAGLLA
TYGLRTDGEPVTMDLGLLYAALKSRKVDMIAANSTDGLAAVLDVKMLEDDRHYFPPYECAVVARAESLARHAGLREALAE
VSGKLNDATMRKLNFGVDGEHRPPAQVAGQFLDATFGKTSR

Sequences:

>Translated_281_residues
MGLGGCGTKPEIVVGSKNFTEQVLLGEILAQHIERRLHVTVGRKFNLGGTLLAQAAITSGAIDLYPEYSGTALTAVLKLP
PSKDAGAVMQQVRDGYRRQWGLEWLPPLGFNNTFAMMVRGDIARPTGIKTLTDAARLQAWKLGAGYEFKQRTDGLAGLLA
TYGLRTDGEPVTMDLGLLYAALKSRKVDMIAANSTDGLAAVLDVKMLEDDRHYFPPYECAVVARAESLARHAGLREALAE
VSGKLNDATMRKLNFGVDGEHRPPAQVAGQFLDATFGKTSR
>Mature_280_residues
GLGGCGTKPEIVVGSKNFTEQVLLGEILAQHIERRLHVTVGRKFNLGGTLLAQAAITSGAIDLYPEYSGTALTAVLKLPP
SKDAGAVMQQVRDGYRRQWGLEWLPPLGFNNTFAMMVRGDIARPTGIKTLTDAARLQAWKLGAGYEFKQRTDGLAGLLAT
YGLRTDGEPVTMDLGLLYAALKSRKVDMIAANSTDGLAAVLDVKMLEDDRHYFPPYECAVVARAESLARHAGLREALAEV
SGKLNDATMRKLNFGVDGEHRPPAQVAGQFLDATFGKTSR

Specific function: Member of a high affinity multicomponent binding- protein-dependent transport system for glycine betaine, carnitine, and choline [H]

COG id: COG1732

COG function: function code M; Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788452, Length=279, Percent_Identity=31.1827956989247, Blast_Score=101, Evalue=6e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007210 [H]

Pfam domain/function: PF04069 OpuAC [H]

EC number: NA

Molecular weight: Translated: 30345; Mature: 30214

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLGGCGTKPEIVVGSKNFTEQVLLGEILAQHIERRLHVTVGRKFNLGGTLLAQAAITSG
CCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHEEEEECCEECCCHHHHHHHHHHCC
AIDLYPEYSGTALTAVLKLPPSKDAGAVMQQVRDGYRRQWGLEWLPPLGFNNTFAMMVRG
CEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEC
DIARPTGIKTLTDAARLQAWKLGAGYEFKQRTDGLAGLLATYGLRTDGEPVTMDLGLLYA
CCCCCCCCHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHH
ALKSRKVDMIAANSTDGLAAVLDVKMLEDDRHYFPPYECAVVARAESLARHAGLREALAE
HHHCCCEEEEEECCCCCEEEHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VSGKLNDATMRKLNFGVDGEHRPPAQVAGQFLDATFGKTSR
HHCCCCHHHHHHEECCCCCCCCCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
GLGGCGTKPEIVVGSKNFTEQVLLGEILAQHIERRLHVTVGRKFNLGGTLLAQAAITSG
CCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHEEEEECCEECCCHHHHHHHHHHCC
AIDLYPEYSGTALTAVLKLPPSKDAGAVMQQVRDGYRRQWGLEWLPPLGFNNTFAMMVRG
CEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEC
DIARPTGIKTLTDAARLQAWKLGAGYEFKQRTDGLAGLLATYGLRTDGEPVTMDLGLLYA
CCCCCCCCHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHH
ALKSRKVDMIAANSTDGLAAVLDVKMLEDDRHYFPPYECAVVARAESLARHAGLREALAE
HHHCCCEEEEEECCCCCEEEHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VSGKLNDATMRKLNFGVDGEHRPPAQVAGQFLDATFGKTSR
HHCCCCHHHHHHEECCCCCCCCCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10216873; 9384377 [H]