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The map label for this gene is opuBB [H]

Identifier: 116620327

GI number: 116620327

Start: 1486529

End: 1487221

Strand: Reverse

Name: opuBB [H]

Synonym: Acid_1204

Alternate gene names: 116620327

Gene position: 1487221-1486529 (Counterclockwise)

Preceding gene: 116620328

Following gene: 116620326

Centisome position: 14.92

GC content: 65.51

Gene sequence:

>693_bases
TTGCGGGCTGCGAGCCAACGGGAGCAGTGTAATACTCCGGGGCACAAATGCACAGCGAAAGGGGAGGTGGGCGGAATGGG
GGAAGGGTTGGCGGAGGAGATATTTTCGCTCTCGTTGGAGCATGTGGAGATGGTGGCGATCACGATTGCGATTGCGGCGG
CGCTGGCGCTGCCGGCGGGGGTGCTGCTGGCGCGGCGGAAGGGCGGGCAGCGATGGGCGGTGGGGTTCGCGAATATCGCG
CAGACGATTCCGAGCCTGGCGCTGTTTGGATTCCTGGTGCCGCTGCCGTGGATTGGAGGAATCGGCAAGCGAACGGCGAT
CGTGGCGTTGTGCCTGTACGCGCTGCTACCGATTCTGCGCAACACGCTGCTGGGGATTTTAGGAGTGGACGCGGGGGTGC
GGGAATCGGCGGTGGCGATGGGGATGACGGAGCGGCAGATACTTTGGGAAGTGGAACTGCCGCTGGCAGCGCCATCGATC
GTGGCGGGGCTGCGGCTGGCCACGGTGGCAACGATCGGGACGGCGACGATTGCGGCGGCGATTGGAGGCGGCGGGCTGGG
GGTGTTCATATTCCGCGGAATTTCCATGGTGGATACGCCGACGGTGTTGGCGGGAGCGCTGCCGGCTGCTTTAATGGCGC
TGGCGGCGGACGGGGGACTTGCATGGATCGAGCGAAGACTCTCGCCGGGCTGA

Upstream 100 bases:

>100_bases
AAGGCGGGCGAGCCGCAAACTGAAATCGTGGTCTACACGTACAACGGACGCTCCCTCACGGTCGCGGCTCTGACGGAGGC
GAATGTTCCGGTGCGGATGT

Downstream 100 bases:

>100_bases
TCGCGCTGGCGGTGGGATTGGGCGGGTGCGGGACCAAGCCCGAGATCGTGGTGGGGTCTAAGAATTTCACCGAGCAGGTG
CTGCTGGGTGAGATTCTGGC

Product: binding-protein-dependent transporter inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MRAASQREQCNTPGHKCTAKGEVGGMGEGLAEEIFSLSLEHVEMVAITIAIAAALALPAGVLLARRKGGQRWAVGFANIA
QTIPSLALFGFLVPLPWIGGIGKRTAIVALCLYALLPILRNTLLGILGVDAGVRESAVAMGMTERQILWEVELPLAAPSI
VAGLRLATVATIGTATIAAAIGGGGLGVFIFRGISMVDTPTVLAGALPAALMALAADGGLAWIERRLSPG

Sequences:

>Translated_230_residues
MRAASQREQCNTPGHKCTAKGEVGGMGEGLAEEIFSLSLEHVEMVAITIAIAAALALPAGVLLARRKGGQRWAVGFANIA
QTIPSLALFGFLVPLPWIGGIGKRTAIVALCLYALLPILRNTLLGILGVDAGVRESAVAMGMTERQILWEVELPLAAPSI
VAGLRLATVATIGTATIAAAIGGGGLGVFIFRGISMVDTPTVLAGALPAALMALAADGGLAWIERRLSPG
>Mature_230_residues
MRAASQREQCNTPGHKCTAKGEVGGMGEGLAEEIFSLSLEHVEMVAITIAIAAALALPAGVLLARRKGGQRWAVGFANIA
QTIPSLALFGFLVPLPWIGGIGKRTAIVALCLYALLPILRNTLLGILGVDAGVRESAVAMGMTERQILWEVELPLAAPSI
VAGLRLATVATIGTATIAAAIGGGGLGVFIFRGISMVDTPTVLAGALPAALMALAADGGLAWIERRLSPG

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788451, Length=200, Percent_Identity=36, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1788449, Length=188, Percent_Identity=40.4255319148936, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1789033, Length=163, Percent_Identity=34.3558282208589, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23539; Mature: 23539

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAASQREQCNTPGHKCTAKGEVGGMGEGLAEEIFSLSLEHVEMVAITIAIAAALALPAG
CCCCCCHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLLARRKGGQRWAVGFANIAQTIPSLALFGFLVPLPWIGGIGKRTAIVALCLYALLPILR
HHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
NTLLGILGVDAGVRESAVAMGMTERQILWEVELPLAAPSIVAGLRLATVATIGTATIAAA
HHHHHHHCCCCCCHHHHHHHCCCCHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
IGGGGLGVFIFRGISMVDTPTVLAGALPAALMALAADGGLAWIERRLSPG
HCCCCHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCC
>Mature Secondary Structure
MRAASQREQCNTPGHKCTAKGEVGGMGEGLAEEIFSLSLEHVEMVAITIAIAAALALPAG
CCCCCCHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLLARRKGGQRWAVGFANIAQTIPSLALFGFLVPLPWIGGIGKRTAIVALCLYALLPILR
HHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
NTLLGILGVDAGVRESAVAMGMTERQILWEVELPLAAPSIVAGLRLATVATIGTATIAAA
HHHHHHHCCCCCCHHHHHHHCCCCHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
IGGGGLGVFIFRGISMVDTPTVLAGALPAALMALAADGGLAWIERRLSPG
HCCCCHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7592481; 10216873; 9384377 [H]