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The map label for this gene is 116620214

Identifier: 116620214

GI number: 116620214

Start: 1343078

End: 1343752

Strand: Reverse

Name: 116620214

Synonym: Acid_1089

Alternate gene names: NA

Gene position: 1343752-1343078 (Counterclockwise)

Preceding gene: 116620215

Following gene: 116620213

Centisome position: 13.48

GC content: 64.89

Gene sequence:

>675_bases
TTGACTGAGCGAAAGTACTCTGTGTCCACGGTCGGACTGCGAATCGACGGATTCCTGAACACGACTCTCGAAAATGCGGG
TATCAACCTGAAGTACGAAATTCAGGACGCCGCTCCTGCGGAGGACGATTTCGAGACCCCGGATGTCCATGTAAAGTTCA
GCGGTCCGGATGTGGACCTGCTGCTTTCGAACCGCGCCGAGTTGCTGCTTTCGCTGGAGCACGTGACGATGGAAATGCTG
CGCATGCCGAGCGAAGATCACTCGCGCATTTCCTTCGACGCCAATGATTACCGGCTGCTGCGCATCGAGGAACTCCGGCT
GAGCGCGGCCGCCGCTGCCGACCGGGTCAAACGTACCGGCACCTATTTCGTTTTCAATCCGATGAACAGCCGCGAGCGCC
GCGTGATCCACCTGGCGCTGCGCAATGAAACCGCCGTGCGCAGCGAGAGTGCCGGCATGGGACCGGGCCGCATGGTGATT
GTCTATCCGGCCGCGATGCCCAGCCTGGCTGAACCACCGCGGCTTCCCGAACCTGCTCCGCGCCGCGAGGAACGTGGCGA
ACGCGGCGAACGCGGGCCCAGGCGCGACAGCCGTGGGCCGGGTGGTCCTCCGCGCCGCGATGGCCGGGGCGGTGGCGGTG
GACGCGGTCCCGGCGGTCCTCGCCGCGGCCGGTAA

Upstream 100 bases:

>100_bases
GGTAAGCATGGGGCAGCAGTGGTTCTTTAACAAGACTTCGATGGCGACGCTTGCCGCCGAGTCGATCGCGCCTCCAAAAA
AGAACGGCAGGAAATAACCC

Downstream 100 bases:

>100_bases
GTATCAATTTAGCCCTACGCGAGCCGCCTGAAAGACGGCTGCAGCCAGGATTGGCTGCCCCACAAGGCGGCAGGCTGCTC
GTGGTTTACACGTAGAACGG

Product: single-stranded nucleic acid binding R3H domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MTERKYSVSTVGLRIDGFLNTTLENAGINLKYEIQDAAPAEDDFETPDVHVKFSGPDVDLLLSNRAELLLSLEHVTMEML
RMPSEDHSRISFDANDYRLLRIEELRLSAAAAADRVKRTGTYFVFNPMNSRERRVIHLALRNETAVRSESAGMGPGRMVI
VYPAAMPSLAEPPRLPEPAPRREERGERGERGPRRDSRGPGGPPRRDGRGGGGGRGPGGPRRGR

Sequences:

>Translated_224_residues
MTERKYSVSTVGLRIDGFLNTTLENAGINLKYEIQDAAPAEDDFETPDVHVKFSGPDVDLLLSNRAELLLSLEHVTMEML
RMPSEDHSRISFDANDYRLLRIEELRLSAAAAADRVKRTGTYFVFNPMNSRERRVIHLALRNETAVRSESAGMGPGRMVI
VYPAAMPSLAEPPRLPEPAPRREERGERGERGPRRDSRGPGGPPRRDGRGGGGGRGPGGPRRGR
>Mature_223_residues
TERKYSVSTVGLRIDGFLNTTLENAGINLKYEIQDAAPAEDDFETPDVHVKFSGPDVDLLLSNRAELLLSLEHVTMEMLR
MPSEDHSRISFDANDYRLLRIEELRLSAAAAADRVKRTGTYFVFNPMNSRERRVIHLALRNETAVRSESAGMGPGRMVIV
YPAAMPSLAEPPRLPEPAPRREERGERGERGPRRDSRGPGGPPRRDGRGGGGGRGPGGPRRGR

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24813; Mature: 24682

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTERKYSVSTVGLRIDGFLNTTLENAGINLKYEIQDAAPAEDDFETPDVHVKFSGPDVDL
CCCCCEEEEEEEEEECCEEECHHHCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEE
LLSNRAELLLSLEHVTMEMLRMPSEDHSRISFDANDYRLLRIEELRLSAAAAADRVKRTG
EECCCHHEEEHHHHHHHHHHHCCCCCCCEEEECCCCEEEEEEHHHHHHHHHHHHHHHHCC
TYFVFNPMNSRERRVIHLALRNETAVRSESAGMGPGRMVIVYPAAMPSLAEPPRLPEPAP
CEEEECCCCCCCCEEEEEEECCCHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
RREERGERGERGPRRDSRGPGGPPRRDGRGGGGGRGPGGPRRGR
CHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TERKYSVSTVGLRIDGFLNTTLENAGINLKYEIQDAAPAEDDFETPDVHVKFSGPDVDL
CCCCEEEEEEEEEECCEEECHHHCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEE
LLSNRAELLLSLEHVTMEMLRMPSEDHSRISFDANDYRLLRIEELRLSAAAAADRVKRTG
EECCCHHEEEHHHHHHHHHHHCCCCCCCEEEECCCCEEEEEEHHHHHHHHHHHHHHHHCC
TYFVFNPMNSRERRVIHLALRNETAVRSESAGMGPGRMVIVYPAAMPSLAEPPRLPEPAP
CEEEECCCCCCCCEEEEEEECCCHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
RREERGERGERGPRRDSRGPGGPPRRDGRGGGGGRGPGGPRRGR
CHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA