Click here to switch to the map view.

The map label for this gene is sodA [H]

Identifier: 116620199

GI number: 116620199

Start: 1325396

End: 1326004

Strand: Reverse

Name: sodA [H]

Synonym: Acid_1072

Alternate gene names: 116620199

Gene position: 1326004-1325396 (Counterclockwise)

Preceding gene: 116620200

Following gene: 116620198

Centisome position: 13.31

GC content: 59.28

Gene sequence:

>609_bases
ATGCCATTCACACTTCCCCCGCTGCCCTACGCCCCCGACGCGTTGGAGCCTCACATTGACAAGATGACTATGGAGATTCA
TCACGGCAAGCATCACAACGCTTACGTGACCAACCTCAATAAGGCTCTGGAATCCGCCCCCGAACTGGCCGATAAGAACA
TCGAGGAACTCCTGGCCAACAATTGCGCCATCGTGCCGGAGAAGATCCGGACCGCGGTGCGCAACAACGGCGGCGGGCAC
ATCAACCACTCCATGTTCTGGAAGATCATGGGTCCCAATGGCGGCGGCGCGCCGGTGGGCAACGTGGCGCAGGCCATCAC
GGGCGCGTTCGGCAGCTTCGACGCGTTCAAGGAAAAGTTCAACGCCGCCGGGGTGGGTCGCTTTGGATCGGGTTGGGCCT
GGCTTCTGAAGACTTCGAGCGGTGTGGAAATCACCTCGACCGCCAACCAGGATAGCCCGATTATGGAGGGCAAGGTCCCG
GTGTTCGGCTGCGATGTCTGGGAGCACGCGTATTACCTGAAATATCAGAACCGGCGTCCGGATTATCTGGCCGCATGGTG
GAACGTGGTCAACTGGAAGGAAATCGAAGACCGCTTCAACGCCAGGTAA

Upstream 100 bases:

>100_bases
GGGATGCAGATTTTGACGAAACATTTCGACGAGTCGACGATGTTCCGCCTCGCCGACGCCTTCGAACACGCACGCAGAGA
ATAAACAAGGAGAGATCGCT

Downstream 100 bases:

>100_bases
TACACGCCTGTTAGAGTAATTGGGCGGGTCAATCCCCCGCCCTCTCTCATGCAGAAATTCGACATCATCGTCATCGGTTC
CGGTCCCGCCGGCCAGCGCG

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MPFTLPPLPYAPDALEPHIDKMTMEIHHGKHHNAYVTNLNKALESAPELADKNIEELLANNCAIVPEKIRTAVRNNGGGH
INHSMFWKIMGPNGGGAPVGNVAQAITGAFGSFDAFKEKFNAAGVGRFGSGWAWLLKTSSGVEITSTANQDSPIMEGKVP
VFGCDVWEHAYYLKYQNRRPDYLAAWWNVVNWKEIEDRFNAR

Sequences:

>Translated_202_residues
MPFTLPPLPYAPDALEPHIDKMTMEIHHGKHHNAYVTNLNKALESAPELADKNIEELLANNCAIVPEKIRTAVRNNGGGH
INHSMFWKIMGPNGGGAPVGNVAQAITGAFGSFDAFKEKFNAAGVGRFGSGWAWLLKTSSGVEITSTANQDSPIMEGKVP
VFGCDVWEHAYYLKYQNRRPDYLAAWWNVVNWKEIEDRFNAR
>Mature_201_residues
PFTLPPLPYAPDALEPHIDKMTMEIHHGKHHNAYVTNLNKALESAPELADKNIEELLANNCAIVPEKIRTAVRNNGGGHI
NHSMFWKIMGPNGGGAPVGNVAQAITGAFGSFDAFKEKFNAAGVGRFGSGWAWLLKTSSGVEITSTANQDSPIMEGKVPV
FGCDVWEHAYYLKYQNRRPDYLAAWWNVVNWKEIEDRFNAR

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=202, Percent_Identity=49.009900990099, Blast_Score=194, Evalue=4e-50,
Organism=Homo sapiens, GI67782305, Length=202, Percent_Identity=49.009900990099, Blast_Score=194, Evalue=4e-50,
Organism=Homo sapiens, GI67782309, Length=202, Percent_Identity=40.0990099009901, Blast_Score=139, Evalue=2e-33,
Organism=Escherichia coli, GI1790342, Length=208, Percent_Identity=54.3269230769231, Blast_Score=228, Evalue=2e-61,
Organism=Escherichia coli, GI1787946, Length=202, Percent_Identity=44.0594059405941, Blast_Score=180, Evalue=5e-47,
Organism=Caenorhabditis elegans, GI17569479, Length=203, Percent_Identity=44.3349753694581, Blast_Score=166, Evalue=1e-41,
Organism=Caenorhabditis elegans, GI17506561, Length=201, Percent_Identity=43.7810945273632, Blast_Score=164, Evalue=2e-41,
Organism=Saccharomyces cerevisiae, GI6321796, Length=208, Percent_Identity=40.8653846153846, Blast_Score=149, Evalue=3e-37,
Organism=Drosophila melanogaster, GI17136812, Length=201, Percent_Identity=42.7860696517413, Blast_Score=159, Evalue=1e-39,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22422; Mature: 22290

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFTLPPLPYAPDALEPHIDKMTMEIHHGKHHNAYVTNLNKALESAPELADKNIEELLAN
CCCCCCCCCCCCCCCCCCHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHC
NCAIVPEKIRTAVRNNGGGHINHSMFWKIMGPNGGGAPVGNVAQAITGAFGSFDAFKEKF
CCCCCCHHHHHHHHCCCCCEECCEEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHH
NAAGVGRFGSGWAWLLKTSSGVEITSTANQDSPIMEGKVPVFGCDVWEHAYYLKYQNRRP
CCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCEEECHHHHHEEEEEECCCCC
DYLAAWWNVVNWKEIEDRFNAR
CHHHHHHCCCCHHHHHHHHCCC
>Mature Secondary Structure 
PFTLPPLPYAPDALEPHIDKMTMEIHHGKHHNAYVTNLNKALESAPELADKNIEELLAN
CCCCCCCCCCCCCCCCCHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHC
NCAIVPEKIRTAVRNNGGGHINHSMFWKIMGPNGGGAPVGNVAQAITGAFGSFDAFKEKF
CCCCCCHHHHHHHHCCCCCEECCEEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHH
NAAGVGRFGSGWAWLLKTSSGVEITSTANQDSPIMEGKVPVFGCDVWEHAYYLKYQNRRP
CCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCEEECHHHHHEEEEEECCCCC
DYLAAWWNVVNWKEIEDRFNAR
CHHHHHHCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1624106 [H]