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The map label for this gene is ydeS [H]

Identifier: 116619739

GI number: 116619739

Start: 741175

End: 741792

Strand: Direct

Name: ydeS [H]

Synonym: Acid_0604

Alternate gene names: 116619739

Gene position: 741175-741792 (Clockwise)

Preceding gene: 116619738

Following gene: 116619743

Centisome position: 7.44

GC content: 61.97

Gene sequence:

>618_bases
TTGACGGGCAACCACGCGAAGCTGCAAAGACCCAGAAGCCGCCGCGCCCACGATAAGGTCCTGGATTCCGCCATCGCGCT
GTTTGCGGATAACGGGATCGATGCCACCAGCATCGATTCGATCGCCGCGCATTCGGGCGTCAGCAAGGCGACCATCTATA
AGCATTGGTCCGACAAGAATGCGCTTTGCCTGGAGGCGCTGGGGCGCGTGCACGGTCTCGATCGCGAACCTCCGAAATTC
GATTCCGGCGACTTGAAGCAGGATTTCATCGATCTGCTGAACCACAAGCCGCCCGACGACCAGGCCCACCTGCGCGACCG
CCTGCTGCCGCACCTGATCGCGTATGGCGCTCGAAATCCGGAGTTCGGGATTGCCTGGCGGACCCGGGTGATGGAGCCGG
CGCGCAAACAGGCCACCGCGCTGATGGACCGCGGCATCGGTCAGGGAATTTTTCCGGCCGACCTGGATAAGGTGGTCGGC
CTTGCGCTGTTGCTCGGTCCGATGTTGTACAAGCACATCTTCCGCAGTTCCACGCCTCAGCCTGTGAATCTCGCGGAAGG
AGTGGTGCACGCCTTCTGGCGCGCCTTCGCGGTCACTTCGCCGAAGAAGCGTAAATGA

Upstream 100 bases:

>100_bases
TCGGGCCTACAATGGATGCGGTGGTGCTTTGCCTTGCGGCATCGGTGTTGCTTGCGGTGGGCACCTATCTCTTCTCCCGA
ATTGAGGTTTGAACCAGCCA

Downstream 100 bases:

>100_bases
CTTTGTATTTTCGCTCGGTATGCTTCCTGATATCGCCCAATTCGAACCAGGCGGGCTTGAAGTGCTGCGTGGAGTATAAG
GCGGCCTGGTCGGCATAGTG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MTGNHAKLQRPRSRRAHDKVLDSAIALFADNGIDATSIDSIAAHSGVSKATIYKHWSDKNALCLEALGRVHGLDREPPKF
DSGDLKQDFIDLLNHKPPDDQAHLRDRLLPHLIAYGARNPEFGIAWRTRVMEPARKQATALMDRGIGQGIFPADLDKVVG
LALLLGPMLYKHIFRSSTPQPVNLAEGVVHAFWRAFAVTSPKKRK

Sequences:

>Translated_205_residues
MTGNHAKLQRPRSRRAHDKVLDSAIALFADNGIDATSIDSIAAHSGVSKATIYKHWSDKNALCLEALGRVHGLDREPPKF
DSGDLKQDFIDLLNHKPPDDQAHLRDRLLPHLIAYGARNPEFGIAWRTRVMEPARKQATALMDRGIGQGIFPADLDKVVG
LALLLGPMLYKHIFRSSTPQPVNLAEGVVHAFWRAFAVTSPKKRK
>Mature_204_residues
TGNHAKLQRPRSRRAHDKVLDSAIALFADNGIDATSIDSIAAHSGVSKATIYKHWSDKNALCLEALGRVHGLDREPPKFD
SGDLKQDFIDLLNHKPPDDQAHLRDRLLPHLIAYGARNPEFGIAWRTRVMEPARKQATALMDRGIGQGIFPADLDKVVGL
ALLLGPMLYKHIFRSSTPQPVNLAEGVVHAFWRAFAVTSPKKRK

Specific function: Potential Regulator Protein For The Acrab Genes. [C]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22750; Mature: 22619

Theoretical pI: Translated: 10.39; Mature: 10.39

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGNHAKLQRPRSRRAHDKVLDSAIALFADNGIDATSIDSIAAHSGVSKATIYKHWSDKN
CCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCC
ALCLEALGRVHGLDREPPKFDSGDLKQDFIDLLNHKPPDDQAHLRDRLLPHLIAYGARNP
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCC
EFGIAWRTRVMEPARKQATALMDRGIGQGIFPADLDKVVGLALLLGPMLYKHIFRSSTPQ
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PVNLAEGVVHAFWRAFAVTSPKKRK
CCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TGNHAKLQRPRSRRAHDKVLDSAIALFADNGIDATSIDSIAAHSGVSKATIYKHWSDKN
CCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCC
ALCLEALGRVHGLDREPPKFDSGDLKQDFIDLLNHKPPDDQAHLRDRLLPHLIAYGARNP
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCC
EFGIAWRTRVMEPARKQATALMDRGIGQGIFPADLDKVVGLALLLGPMLYKHIFRSSTPQ
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PVNLAEGVVHAFWRAFAVTSPKKRK
CCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]