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The map label for this gene is nodJ [H]

Identifier: 116619738

GI number: 116619738

Start: 740420

End: 741166

Strand: Direct

Name: nodJ [H]

Synonym: Acid_0603

Alternate gene names: 116619738

Gene position: 740420-741166 (Clockwise)

Preceding gene: 116619737

Following gene: 116619739

Centisome position: 7.43

GC content: 61.04

Gene sequence:

>747_bases
ATGGAAGCCGTCTATGCCCTGTGGCTGCGTGAAATCAAGCGCTACGCCCGTTCGCCCGTGCAAATCGTTGTCTCTCTCGG
CCAGCCGATGCTCTATCTGCTGGTGCTCGGCTTTGGCCTCAGCCCCGTGTTTCAGCGGGCCGGGAGCGGCAGCTACCTGC
AGTTCGTGGCGCCCGGCGTGATCGGCATGAGCATTCTCTTCTCCTCTGTATTCTCGGGAGTCGGCCTGCTGTGGGACCGC
CAGTTCGGGTTTCTTAAGGAAACCCTGGTCGCGCCCGTCCCGCGCCATCGCATCATCATGGGCCGCACGCTCGGCGCGGC
CACGGTCGCGGTGATTCAAGGGACGCTGGTCATGATCGTCTGCCTGATCGCGGGTTTCCGTCCCGCGAACTTTGCCGCGC
TTCCCGTGGCGATGCTCTTCATGCTGATGATCGCTACCGTCTTCGCCGCCATGGGTTCGGCCATCGGCTCCGTATTACAG
GACATGCAGGGCTTCCAACTCATCATGAGCTTCCTGGTGATGCCCATCTTTTTCCTCTCCGGCGCCCTGTTCCCGCTCAC
CGGTCTTCCCTTCGCTTTGAAGGTGCTGACCCGTCTGGATCCGCTTTCCTACGGGATCGACGGTATTCGCGGCTCGCTGA
TCAACGCTCCTCATTTCGGGCCTACAATGGATGCGGTGGTGCTTTGCCTTGCGGCATCGGTGTTGCTTGCGGTGGGCACC
TATCTCTTCTCCCGAATTGAGGTTTGA

Upstream 100 bases:

>100_bases
TGGAACACGCGTTTCTCGCGCTCACCGGGTCAAGCGTGCGCGATGAAAGCTCCACTTCCGTGGATCAAATGCGTCAATTT
GTGAAAGCGTGGAGGAAATA

Downstream 100 bases:

>100_bases
ACCAGCCATTGACGGGCAACCACGCGAAGCTGCAAAGACCCAGAAGCCGCCGCGCCCACGATAAGGTCCTGGATTCCGCC
ATCGCGCTGTTTGCGGATAA

Product: ABC-2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MEAVYALWLREIKRYARSPVQIVVSLGQPMLYLLVLGFGLSPVFQRAGSGSYLQFVAPGVIGMSILFSSVFSGVGLLWDR
QFGFLKETLVAPVPRHRIIMGRTLGAATVAVIQGTLVMIVCLIAGFRPANFAALPVAMLFMLMIATVFAAMGSAIGSVLQ
DMQGFQLIMSFLVMPIFFLSGALFPLTGLPFALKVLTRLDPLSYGIDGIRGSLINAPHFGPTMDAVVLCLAASVLLAVGT
YLFSRIEV

Sequences:

>Translated_248_residues
MEAVYALWLREIKRYARSPVQIVVSLGQPMLYLLVLGFGLSPVFQRAGSGSYLQFVAPGVIGMSILFSSVFSGVGLLWDR
QFGFLKETLVAPVPRHRIIMGRTLGAATVAVIQGTLVMIVCLIAGFRPANFAALPVAMLFMLMIATVFAAMGSAIGSVLQ
DMQGFQLIMSFLVMPIFFLSGALFPLTGLPFALKVLTRLDPLSYGIDGIRGSLINAPHFGPTMDAVVLCLAASVLLAVGT
YLFSRIEV
>Mature_248_residues
MEAVYALWLREIKRYARSPVQIVVSLGQPMLYLLVLGFGLSPVFQRAGSGSYLQFVAPGVIGMSILFSSVFSGVGLLWDR
QFGFLKETLVAPVPRHRIIMGRTLGAATVAVIQGTLVMIVCLIAGFRPANFAALPVAMLFMLMIATVFAAMGSAIGSVLQ
DMQGFQLIMSFLVMPIFFLSGALFPLTGLPFALKVLTRLDPLSYGIDGIRGSLINAPHFGPTMDAVVLCLAASVLLAVGT
YLFSRIEV

Specific function: Part of the ABC transporter complex nodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modifi

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1786320, Length=214, Percent_Identity=29.9065420560748, Blast_Score=77, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525
- InterPro:   IPR005981 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 26669; Mature: 26669

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHCCC
>Mature Secondary Structure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HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3019841; 3419422 [H]