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The map label for this gene is atpH

Identifier: 116619601

GI number: 116619601

Start: 566367

End: 566921

Strand: Direct

Name: atpH

Synonym: Acid_0462

Alternate gene names: 116619601

Gene position: 566367-566921 (Clockwise)

Preceding gene: 116619600

Following gene: 116619602

Centisome position: 5.68

GC content: 63.06

Gene sequence:

>555_bases
ATGACACTCTCTGCCGTAGCCACGCGATATGCCAACGCGCTCGCGGACGTAGTGAGTCCGGGCTCGAGCCCGATTCGTCC
CGAAGCCGCGCTCGAAGAGCTGCGTGCCTTCGAAGCCGCCCTTAAATCATCGGTCGAATTGCACAACGCGCTGACTTCCC
CGTCGGTTCCCGTGGGACGCAAACGCGCGGTGGTCGGACGCATCAGCGACACGCTCAAGATCTCGCCGATTGTGCGCAAT
TTTCTGTTTGTGCTGGTCGATCACCGGCGCATCGCCTCCCTCACCGAGATTCTCCATAGTTTCGAATTGATCATGGACGA
GCGCCTCGGTTTTGCGCGTGCGGAGATTTCGTCGGCGCGGGAGTTGACCGAGCCGCAGCGCACCGCGCTCAGCGCGCAGC
TTGCCCAGTTGACCGGCAAACAGATCCGGATGCGCTTCGCGGTGGACGAAGCGCTGATCGGCGGCGCGGTCGCGCGGATC
GGCTCCACGGTTTACGACGGCAGTGTGCGCGGCCAGTTGCAGACGCTGGAACGGCGCCTCAGTACGGAACGATAA

Upstream 100 bases:

>100_bases
CCGCGGAGTTGGCCGTCGAGCTGGCTGAGCAGAAGGTCCGCGCCCGCATGACGCCTGAGACCCAGGACGCGCTGGTGCAA
GGATTCGTACGTAACCTGAA

Downstream 100 bases:

>100_bases
TCGGAAGGAAATATGGCTCACATTCGAGCGGACGAAATTACCAGTATTCTGCGCCAGGAGATTGAGAATTACGAGCGCGC
GATCGATGTCTCCGAGGTTG

Product: ATP synthase F1 subunit delta

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F(1) sector subunit delta; F-type ATPase subunit delta; F-ATPase subunit delta

Number of amino acids: Translated: 184; Mature: 183

Protein sequence:

>184_residues
MTLSAVATRYANALADVVSPGSSPIRPEAALEELRAFEAALKSSVELHNALTSPSVPVGRKRAVVGRISDTLKISPIVRN
FLFVLVDHRRIASLTEILHSFELIMDERLGFARAEISSARELTEPQRTALSAQLAQLTGKQIRMRFAVDEALIGGAVARI
GSTVYDGSVRGQLQTLERRLSTER

Sequences:

>Translated_184_residues
MTLSAVATRYANALADVVSPGSSPIRPEAALEELRAFEAALKSSVELHNALTSPSVPVGRKRAVVGRISDTLKISPIVRN
FLFVLVDHRRIASLTEILHSFELIMDERLGFARAEISSARELTEPQRTALSAQLAQLTGKQIRMRFAVDEALIGGAVARI
GSTVYDGSVRGQLQTLERRLSTER
>Mature_183_residues
TLSAVATRYANALADVVSPGSSPIRPEAALEELRAFEAALKSSVELHNALTSPSVPVGRKRAVVGRISDTLKISPIVRNF
LFVLVDHRRIASLTEILHSFELIMDERLGFARAEISSARELTEPQRTALSAQLAQLTGKQIRMRFAVDEALIGGAVARIG
STVYDGSVRGQLQTLERRLSTER

Specific function: This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction

COG id: COG0712

COG function: function code C; F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein)

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase delta chain family

Homologues:

Organism=Caenorhabditis elegans, GI71984710, Length=180, Percent_Identity=26.1111111111111, Blast_Score=67, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI71984717, Length=180, Percent_Identity=26.1111111111111, Blast_Score=67, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPD_SOLUE (Q02BU4)

Other databases:

- EMBL:   CP000473
- RefSeq:   YP_821757.1
- ProteinModelPortal:   Q02BU4
- SMR:   Q02BU4
- STRING:   Q02BU4
- GeneID:   4431465
- GenomeReviews:   CP000473_GR
- KEGG:   sus:Acid_0462
- NMPDR:   fig|234267.9.peg.435
- eggNOG:   COG0712
- HOGENOM:   HBG668108
- OMA:   STVYDGS
- PhylomeDB:   Q02BU4
- ProtClustDB:   CLSK775159
- HAMAP:   MF_01416
- InterPro:   IPR000711
- Gene3D:   G3DSA:1.10.520.20
- PANTHER:   PTHR11910
- PRINTS:   PR00125
- TIGRFAMs:   TIGR01145

Pfam domain/function: PF00213 OSCP; SSF47928 ATPsynt_OSCP

EC number: 3.6.3.14

Molecular weight: Translated: 20064; Mature: 19933

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: PS00389 ATPASE_DELTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLSAVATRYANALADVVSPGSSPIRPEAALEELRAFEAALKSSVELHNALTSPSVPVGR
CCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
KRAVVGRISDTLKISPIVRNFLFVLVDHRRIASLTEILHSFELIMDERLGFARAEISSAR
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
ELTEPQRTALSAQLAQLTGKQIRMRFAVDEALIGGAVARIGSTVYDGSVRGQLQTLERRL
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHH
STER
CCCC
>Mature Secondary Structure 
TLSAVATRYANALADVVSPGSSPIRPEAALEELRAFEAALKSSVELHNALTSPSVPVGR
CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
KRAVVGRISDTLKISPIVRNFLFVLVDHRRIASLTEILHSFELIMDERLGFARAEISSAR
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
ELTEPQRTALSAQLAQLTGKQIRMRFAVDEALIGGAVARIGSTVYDGSVRGQLQTLERRL
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHH
STER
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA