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The map label for this gene is 116619578

Identifier: 116619578

GI number: 116619578

Start: 546256

End: 547317

Strand: Direct

Name: 116619578

Synonym: Acid_0439

Alternate gene names: NA

Gene position: 546256-547317 (Clockwise)

Preceding gene: 116619577

Following gene: 116619585

Centisome position: 5.48

GC content: 62.43

Gene sequence:

>1062_bases
GTGTTCTCTGTCGATCCTGCCGAATCCGCACAGGAAGCGGGCCTGCGCTACGTATCCGGATGCGGCGCTTGCATCCAGCG
GATCCGGCGCGGCAAAAGTTTCCGCTACACCGGACCGGACGGAAAACCCTTACGCGATGCCAGGCATCTGGAGCGTATCC
GGTCGCTGGCCATTCCTCCCGCCTGGGAAAAGGTATGGATCTGCCCGTCTCCGAACGGCCACCTGCAGGCCTTCGGTTGG
GACGCCCGCGGGCGCAAGCAATATCGCTATCATCCCAAGTACCGGGAGGTGCGCGATCAGGCCAAGTTCAGCCGTATGCT
GGCCTTCGGCACCGTGCTCGCGCTGATCCGCAAGCGCGTGGCGGAAGATCTGGCTCGCCGCGGCCTGCCCAAAGAGAAGG
TTCTCGCAACCGTGGTGCGCCTGCTGGAGACTACTTTTATTCGCGTGGGCAACGACGAGTACGCGCGCGACAATGAATCC
TTCGGCCTGACCACGATGCGCAACCGGCACGTGCGGATTGAGGGCGCGCGGCTCAACTTTCACTTCCGCGGCAAGAGCGG
CCAGGATCACACCATCGAACTGACCGACCGCCGCCTGGCGAAGATCGTCCGGGAATGCCAGGATTTGCCGGGCTACGAAC
TTTTTGAATACGTCGATGAATCGGGGCAGGTCGGCCGCATCGATTCCTGCGACGTCAACGAGTACATTCGAGAGATTACG
GGGCAGGATTTCACGGCCAAGGACTTCCGTACATGGGCCGGGACAGTGATTGCCGCCACCGAGCTCAACGCCTGCGAAAA
GTGCGACAGCGAAACGGCGGTCAAGAGGAACATTGCCGCCGCGGTGAAGAACGTCGCGCGCCGCTTGGGGAACCGCCCGG
CGACGTGCCGCAAATACTACATCCATCCCGCGATTCTGGATGCATATGCGGATGGGTCGCTATTCGCGCGGATGGAGCAG
GGTGAGCAGCAGAACGCGGCTTACGGGGGCCTCGGACTTCGCCCGGAAGAATACTGTGTCATGGTTCTGATCGCCGACCA
CCAGCTTGCCGCCGCGGCGTGA

Upstream 100 bases:

>100_bases
TCGAGAGCCGCCCGGGACGCACGGCGTTCCAGGTCCGCCTTCCTTACCCAAAGGTGGCCGCCTGAACGCAACTGGCCCTT
AACTTGCATCGAACGGAGAT

Downstream 100 bases:

>100_bases
GAGGCGGCTCCCATCCACCTATGGCCGCGCCGTCATCCGGATATCCACCTGCGTCCTTTCCCCTACCGGCCCGACTTCAA
TCCGAATGTCGATCCTCGGC

Product: putative DNA topoisomerase I

Products: NA

Alternate protein names: DNA poisomerase I; DNA poisomerase Type I; DNA poisomerase IB; Type I poisomerase; DNA poisomerase I Protein; Poisomerase IB; Poisomerase IB-Like Protein; DNA poisomerase I-Like Protein; Viral-Like DNA poisomerase; DNA poisomerase ; Eukaryotic-Like DNA poisomerase I; DNA poisomerasei; -Like DNA poisomerase I; Type I DNA poisomerase

Number of amino acids: Translated: 353; Mature: 353

Protein sequence:

>353_residues
MFSVDPAESAQEAGLRYVSGCGACIQRIRRGKSFRYTGPDGKPLRDARHLERIRSLAIPPAWEKVWICPSPNGHLQAFGW
DARGRKQYRYHPKYREVRDQAKFSRMLAFGTVLALIRKRVAEDLARRGLPKEKVLATVVRLLETTFIRVGNDEYARDNES
FGLTTMRNRHVRIEGARLNFHFRGKSGQDHTIELTDRRLAKIVRECQDLPGYELFEYVDESGQVGRIDSCDVNEYIREIT
GQDFTAKDFRTWAGTVIAATELNACEKCDSETAVKRNIAAAVKNVARRLGNRPATCRKYYIHPAILDAYADGSLFARMEQ
GEQQNAAYGGLGLRPEEYCVMVLIADHQLAAAA

Sequences:

>Translated_353_residues
MFSVDPAESAQEAGLRYVSGCGACIQRIRRGKSFRYTGPDGKPLRDARHLERIRSLAIPPAWEKVWICPSPNGHLQAFGW
DARGRKQYRYHPKYREVRDQAKFSRMLAFGTVLALIRKRVAEDLARRGLPKEKVLATVVRLLETTFIRVGNDEYARDNES
FGLTTMRNRHVRIEGARLNFHFRGKSGQDHTIELTDRRLAKIVRECQDLPGYELFEYVDESGQVGRIDSCDVNEYIREIT
GQDFTAKDFRTWAGTVIAATELNACEKCDSETAVKRNIAAAVKNVARRLGNRPATCRKYYIHPAILDAYADGSLFARMEQ
GEQQNAAYGGLGLRPEEYCVMVLIADHQLAAAA
>Mature_353_residues
MFSVDPAESAQEAGLRYVSGCGACIQRIRRGKSFRYTGPDGKPLRDARHLERIRSLAIPPAWEKVWICPSPNGHLQAFGW
DARGRKQYRYHPKYREVRDQAKFSRMLAFGTVLALIRKRVAEDLARRGLPKEKVLATVVRLLETTFIRVGNDEYARDNES
FGLTTMRNRHVRIEGARLNFHFRGKSGQDHTIELTDRRLAKIVRECQDLPGYELFEYVDESGQVGRIDSCDVNEYIREIT
GQDFTAKDFRTWAGTVIAATELNACEKCDSETAVKRNIAAAVKNVARRLGNRPATCRKYYIHPAILDAYADGSLFARMEQ
GEQQNAAYGGLGLRPEEYCVMVLIADHQLAAAA

Specific function: Unknown

COG id: COG3569

COG function: function code L; Topoisomerase IB

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39961; Mature: 39961

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSVDPAESAQEAGLRYVSGCGACIQRIRRGKSFRYTGPDGKPLRDARHLERIRSLAIPP
CCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHCCCC
AWEKVWICPSPNGHLQAFGWDARGRKQYRYHPKYREVRDQAKFSRMLAFGTVLALIRKRV
CCCEEEECCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEDLARRGLPKEKVLATVVRLLETTFIRVGNDEYARDNESFGLTTMRNRHVRIEGARLNF
HHHHHHCCCCHHHHHHHHHHHHHHHHEEECCCHHCCCCCCCCCEEECCCEEEEEEEEEEE
HFRGKSGQDHTIELTDRRLAKIVRECQDLPGYELFEYVDESGQVGRIDSCDVNEYIREIT
EECCCCCCCCEEEEHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHC
GQDFTAKDFRTWAGTVIAATELNACEKCDSETAVKRNIAAAVKNVARRLGNRPATCRKYY
CCCCCHHHHHHHHCCEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHEE
IHPAILDAYADGSLFARMEQGEQQNAAYGGLGLRPEEYCVMVLIADHQLAAAA
ECHHHHHHHCCCHHHHHHHCCCHHCCCCCCCCCCCHHEEEEEEEECCCHHHCC
>Mature Secondary Structure
MFSVDPAESAQEAGLRYVSGCGACIQRIRRGKSFRYTGPDGKPLRDARHLERIRSLAIPP
CCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHCCCC
AWEKVWICPSPNGHLQAFGWDARGRKQYRYHPKYREVRDQAKFSRMLAFGTVLALIRKRV
CCCEEEECCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEDLARRGLPKEKVLATVVRLLETTFIRVGNDEYARDNESFGLTTMRNRHVRIEGARLNF
HHHHHHCCCCHHHHHHHHHHHHHHHHEEECCCHHCCCCCCCCCEEECCCEEEEEEEEEEE
HFRGKSGQDHTIELTDRRLAKIVRECQDLPGYELFEYVDESGQVGRIDSCDVNEYIREIT
EECCCCCCCCEEEEHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHC
GQDFTAKDFRTWAGTVIAATELNACEKCDSETAVKRNIAAAVKNVARRLGNRPATCRKYY
CCCCCHHHHHHHHCCEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHEE
IHPAILDAYADGSLFARMEQGEQQNAAYGGLGLRPEEYCVMVLIADHQLAAAA
ECHHHHHHHCCCHHHHHHHCCCHHCCCCCCCCCCCHHEEEEEEEECCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA