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The map label for this gene is yubA [H]

Identifier: 116517014

GI number: 116517014

Start: 1347128

End: 1348294

Strand: Reverse

Name: yubA [H]

Synonym: SPD_1332

Alternate gene names: 116517014

Gene position: 1348294-1347128 (Counterclockwise)

Preceding gene: 116516397

Following gene: 116515949

Centisome position: 65.9

GC content: 38.39

Gene sequence:

>1167_bases
ATGGAGCAAAAAGAGAAACATTTTAGCCTATCTTGGTTTTTCAAGTGGTTTTTAGATAACAAGGCAATTACGGTATTTTT
AGTAACCTTATTATTGGGACTGAATCTTTTTATTTTAAGTAAGATTAGTTTTCTATTTTCACCTGTTTTAGACTTTTTAG
CAGTTGTGATGTTGCCAGTCATTTTGTCTGGTTTGTTATATTATTTGTTGAATCCTATTGTTGATTGGATGGAGAAGCAT
AAGGTTAATCGTGTTATAGCTATCACTATTGTCTTTGTTATCATCGCTCTCTTTATCATTTGGGGCTTGGCAGTCGCCAT
TCCAAATCTGCAACGTCAGGTTTTGACCTTTGCAAGAAACGTTCCTGTTTACTTAGAAGATATAGATAGGATTGTTAATG
GATTGGTAGCCCAGCACCTGCCAGATGATTTCAGACCTCAATTAGAGCAAGTTTTGACCAATTTTTCTAGCCAGGCTACA
GTTTTGGCAAGTAAGGTTTCATCTCAGGCAGTCAACTGGGTGAGTGCCTTTATTAGCGGGGCTTCTCAAGTGATTGTTGC
CTTGATTATCGTTCCTTTCATGCTCTTTTATCTCTTGCGTGATGGGAAAGGCTTGCGTAACTATTTGACCCAATTCATTC
CAAGAAAATTGAAGGAACCTGTTGGACAAGTTTTATCAGATGTGAATCAACAGTTGTCCAACTATGTTCGAGGGCAAGTG
ACAGTGGCTATTATTGTAGCAGTAATGTTTATCATCTTCTTCAAGATTATTGGTCTACGCTATGCGGTTACGCTGGGGGT
TACTGCTGGTATTTTAAATCTGGTCCCTTATCTTGGTAGCTTTCTAGCCATGCTTCCTGCTCTAGTATTGGGTTTGATTG
CTGGTCCAGTCATGCTTTTGAAAGTAGTGATTGTCTTTATCGTAGAACAAACTATTGAAGGCCGTTTTGTCTCTCCATTG
ATTTTGGGAAGTCAATTAAACATCCACCCTATTAATGTTCTCTTTGTTTTGTTAACTTCAGGATCTATGTTTGGTATCTG
GGGAGTTTTACTTGGTATTCCGGTTTATGCCTCTGCTAAGGTTGTCATTTCAGCCATTTTCGAATGGTATAAGGTAGTCA
GTGGTCTATATGAATTAGAGGGTGAGGAAGTCAAGAGTGAACAATAG

Upstream 100 bases:

>100_bases
CAAGTAAATTAAAGATATCCAATTAGATGTAAGCACTTTAAAAAAGAGTTATTTTGTTTCAAAAATGGTATAATGAGAGA
ACAATAGAAAGGAAGTATTT

Downstream 100 bases:

>100_bases
TCAACAGATGTTACAGGCTTTGGAGGAGCAAGATTTAACTAAGGCTGAGCATTATTTCGCCAAAGCTTTAGAAAATGATT
CAAGTGATCTTCTGTATGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MEQKEKHFSLSWFFKWFLDNKAITVFLVTLLLGLNLFILSKISFLFSPVLDFLAVVMLPVILSGLLYYLLNPIVDWMEKH
KVNRVIAITIVFVIIALFIIWGLAVAIPNLQRQVLTFARNVPVYLEDIDRIVNGLVAQHLPDDFRPQLEQVLTNFSSQAT
VLASKVSSQAVNWVSAFISGASQVIVALIIVPFMLFYLLRDGKGLRNYLTQFIPRKLKEPVGQVLSDVNQQLSNYVRGQV
TVAIIVAVMFIIFFKIIGLRYAVTLGVTAGILNLVPYLGSFLAMLPALVLGLIAGPVMLLKVVIVFIVEQTIEGRFVSPL
ILGSQLNIHPINVLFVLLTSGSMFGIWGVLLGIPVYASAKVVISAIFEWYKVVSGLYELEGEEVKSEQ

Sequences:

>Translated_388_residues
MEQKEKHFSLSWFFKWFLDNKAITVFLVTLLLGLNLFILSKISFLFSPVLDFLAVVMLPVILSGLLYYLLNPIVDWMEKH
KVNRVIAITIVFVIIALFIIWGLAVAIPNLQRQVLTFARNVPVYLEDIDRIVNGLVAQHLPDDFRPQLEQVLTNFSSQAT
VLASKVSSQAVNWVSAFISGASQVIVALIIVPFMLFYLLRDGKGLRNYLTQFIPRKLKEPVGQVLSDVNQQLSNYVRGQV
TVAIIVAVMFIIFFKIIGLRYAVTLGVTAGILNLVPYLGSFLAMLPALVLGLIAGPVMLLKVVIVFIVEQTIEGRFVSPL
ILGSQLNIHPINVLFVLLTSGSMFGIWGVLLGIPVYASAKVVISAIFEWYKVVSGLYELEGEEVKSEQ
>Mature_388_residues
MEQKEKHFSLSWFFKWFLDNKAITVFLVTLLLGLNLFILSKISFLFSPVLDFLAVVMLPVILSGLLYYLLNPIVDWMEKH
KVNRVIAITIVFVIIALFIIWGLAVAIPNLQRQVLTFARNVPVYLEDIDRIVNGLVAQHLPDDFRPQLEQVLTNFSSQAT
VLASKVSSQAVNWVSAFISGASQVIVALIIVPFMLFYLLRDGKGLRNYLTQFIPRKLKEPVGQVLSDVNQQLSNYVRGQV
TVAIIVAVMFIIFFKIIGLRYAVTLGVTAGILNLVPYLGSFLAMLPALVLGLIAGPVMLLKVVIVFIVEQTIEGRFVSPL
ILGSQLNIHPINVLFVLLTSGSMFGIWGVLLGIPVYASAKVVISAIFEWYKVVSGLYELEGEEVKSEQ

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1788838, Length=365, Percent_Identity=27.1232876712329, Blast_Score=118, Evalue=8e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 43285; Mature: 43285

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]