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The map label for this gene is atpC

Identifier: 116516397

GI number: 116516397

Start: 1349496

End: 1349915

Strand: Reverse

Name: atpC

Synonym: SPD_1334

Alternate gene names: 116516397

Gene position: 1349915-1349496 (Counterclockwise)

Preceding gene: 116516544

Following gene: 116517014

Centisome position: 65.97

GC content: 43.1

Gene sequence:

>420_bases
ATGGCTCAGTTAACTGTCCAGATCGTGACACCAGATGGTCTCGTCTATGATCACCATGCCAGCTATGTATCGGTTCGAAC
TCTGGATGGTGAGATGGGGATCTTGCCACGACATGAAAATATGATTGCGGTTTTAGCAGTTGATGAAGTAAAGGTAAAAC
GTATCGATGATAAAGATCACGTGAACTGGATTGCAGTAAACGGTGGCGTTATTGAAATTGCCAATGATATGATCACAATC
GTCGCTGACTCTGCAGAACGTGCTCGTGATATCGATATCAGTCGTGCAGAACGTGCCAAACTTCGTGCAGAACGTGCAAT
TGAAGAAGCACAAGACAAACATTTGATTGACCAAGAACGTCGTGCTAAGATTGCTTTGCAACGTGCTATTAACCGTATTA
ATGTCGGAAATAGACTATAA

Upstream 100 bases:

>100_bases
GGTAAATACGACCACTTGCCAGAAGATGCCTTCCGTGGTGTAGGTTCTATCGAAGATGTGATTGCAAAAGCTGAAAAAAT
GGGATTTTAAGAGGTGATCT

Downstream 100 bases:

>100_bases
GAAAAAATGAACTTGAAAATACCAAGTTCATTTTTTATGGTGTTTTAAGGAGCAAAACGGATGCAGACTGCTTCGGGAAC
ATGGAAGTCGTTGGAGAGTT

Product: F0F1 ATP synthase subunit epsilon

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F1 sector epsilon subunit; F-ATPase epsilon subunit

Number of amino acids: Translated: 139; Mature: 138

Protein sequence:

>139_residues
MAQLTVQIVTPDGLVYDHHASYVSVRTLDGEMGILPRHENMIAVLAVDEVKVKRIDDKDHVNWIAVNGGVIEIANDMITI
VADSAERARDIDISRAERAKLRAERAIEEAQDKHLIDQERRAKIALQRAINRINVGNRL

Sequences:

>Translated_139_residues
MAQLTVQIVTPDGLVYDHHASYVSVRTLDGEMGILPRHENMIAVLAVDEVKVKRIDDKDHVNWIAVNGGVIEIANDMITI
VADSAERARDIDISRAERAKLRAERAIEEAQDKHLIDQERRAKIALQRAINRINVGNRL
>Mature_138_residues
AQLTVQIVTPDGLVYDHHASYVSVRTLDGEMGILPRHENMIAVLAVDEVKVKRIDDKDHVNWIAVNGGVIEIANDMITIV
ADSAERARDIDISRAERAKLRAERAIEEAQDKHLIDQERRAKIALQRAINRINVGNRL

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane

COG id: COG0355

COG function: function code C; F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit)

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase epsilon chain family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPE_STRP2 (Q04N64)

Other databases:

- EMBL:   CP000410
- RefSeq:   YP_816796.1
- ProteinModelPortal:   Q04N64
- SMR:   Q04N64
- STRING:   Q04N64
- EnsemblBacteria:   EBSTRT00000019622
- GeneID:   4441604
- GenomeReviews:   CP000410_GR
- KEGG:   spd:SPD_1334
- eggNOG:   COG0355
- GeneTree:   EBGT00050000027892
- HOGENOM:   HBG663981
- OMA:   DHHAKFI
- ProtClustDB:   PRK00571
- HAMAP:   MF_00530
- InterPro:   IPR001469
- InterPro:   IPR020547
- InterPro:   IPR020546
- Gene3D:   G3DSA:1.20.5.440
- Gene3D:   G3DSA:2.60.15.10
- PANTHER:   PTHR13822
- ProDom:   PD000944
- TIGRFAMs:   TIGR01216

Pfam domain/function: PF00401 ATP-synt_DE; PF02823 ATP-synt_DE_N; SSF51344 ATPsynt_DE

EC number: 3.6.3.14

Molecular weight: Translated: 15638; Mature: 15507

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQLTVQIVTPDGLVYDHHASYVSVRTLDGEMGILPRHENMIAVLAVDEVKVKRIDDKDH
CCEEEEEEECCCCEEEECCCCEEEEEEECCCCCCCCCCCCEEEEEEECCEEEEECCCCCC
VNWIAVNGGVIEIANDMITIVADSAERARDIDISRAERAKLRAERAIEEAQDKHLIDQER
EEEEEECCCEEEECCCEEEEEECCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHH
RAKIALQRAINRINVGNRL
HHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
AQLTVQIVTPDGLVYDHHASYVSVRTLDGEMGILPRHENMIAVLAVDEVKVKRIDDKDH
CEEEEEEECCCCEEEECCCCEEEEEEECCCCCCCCCCCCEEEEEEECCEEEEECCCCCC
VNWIAVNGGVIEIANDMITIVADSAERARDIDISRAERAKLRAERAIEEAQDKHLIDQER
EEEEEECCCEEEECCCEEEEEECCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHH
RAKIALQRAINRINVGNRL
HHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA