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The map label for this gene is atpD [H]

Identifier: 116516544

GI number: 116516544

Start: 1349926

End: 1351332

Strand: Reverse

Name: atpD [H]

Synonym: SPD_1335

Alternate gene names: 116516544

Gene position: 1351332-1349926 (Counterclockwise)

Preceding gene: 116515905

Following gene: 116516397

Centisome position: 66.04

GC content: 44.85

Gene sequence:

>1407_bases
ATGAGTTCAGGTAAAATTGCTCAGGTTATCGGTCCCGTTGTAGACGTTTTGTTTGCAGCAGGGGAAAAACTTCCTGAGAT
TAACAATGCACTTGTCGTCTACAAAAATGACGAAAGAAAAACAAAAATCGTCCTTGAAGTAGCCTTGGAGTTAGGAGATG
GTATGGTTCGTACTATCGCCATGGAATCAACAGATGGGTTGACTCGTGGAATGGAAGTATTGGACACAGGTCGTCCAATC
TCTGTACCAGTAGGTAAAGAAACTTTGGGACGTGTCTTCAACGTTTTGGGAGATACCATTGACTTGGAAGCTCCTTTTAC
AGAAGACGCAGAGCGTCAGCCAATTCATAAAAAAGCTCCAACTTTTGATGAGTTGTCTACCTCTTCTGAAATCCTTGAAA
CAGGGATCAAGGTTATTGACCTTCTTGCCCCTTACCTTAAAGGTGGTAAAGTTGGACTTTTCGGTGGTGCCGGAGTTGGT
AAAACTGTCTTAATCCAAGAATTGATTCACAACATTGCCCAAGAGCACGGTGGTATTTCAGTATTTGCTGGTGTTGGGGA
ACGTACTCGTGAGGGGAATGACCTTTACTGGGAAATGAAAGAATCAGGCGTTATCGAGAAAACAGCCATGGTCTTTGGTC
AGATGAATGAGCCACCAGGAGCACGTATGCGTGTTGCCCTTACTGGTTTGACAATCGCTGAATACTTCCGTGATGTGGAA
GGCCAAGACGTGCTTCTCTTTATCGATAATATCTTCCGTTTCACTCAGGCTGGTTCAGAAGTATCTGCCCTTTTGGGTCG
TATGCCATCAGCCGTTGGTTACCAACCAACACTTGCTACGGAAATGGGTCAATTGCAAGAACGTATCACATCAACCAAGA
AGGGTTCTGTAACCTCTATCCAGGCTATCTATGTGCCAGCGGATGACTATACTGACCCAGCGCCAGCAACAGCCTTCGCT
CACTTGGATTCAACAACAAACTTGGAACGTAAGTTGGTACAATTGGGTATCTACCCAGCCGTTGACCCACTTGCTTCAAG
CTCACGTGCCTTGGCACCTGAAATCGTTGGAGAAGAGCACTATGCAGTTGCTGCTGAAGTAAAACGTGTCCTTCAACGTT
ACCATGAATTGCAAGATATCATTGCTATCCTTGGTATGGATGAGCTTTCTGATGAAGAAAAGACCTTGGTTGCTCGCGCC
CGTCGTATCCAGTTCTTCTTGTCACAAAACTTCAACGTTGCGGAACAATTTACTGGTCAGCCAGGTTCTTATGTTCCAGT
TGCTGAAACTGTACGTGGCTTTAAGGAAATCCTTGATGGTAAATACGACCACTTGCCAGAAGATGCCTTCCGTGGTGTAG
GTTCTATCGAAGATGTGATTGCAAAAGCTGAAAAAATGGGATTTTAA

Upstream 100 bases:

>100_bases
AGTGCCTTAGAATAGGCTCTAGTCCAGCTCGTATGAAAATGAACTTAGGACCTAGTTGAGCTAGGAACCGACAGTATCTT
ATATAGAATAGGAGAAGGAG

Downstream 100 bases:

>100_bases
GAGGTGATCTATGGCTCAGTTAACTGTCCAGATCGTGACACCAGATGGTCTCGTCTATGATCACCATGCCAGCTATGTAT
CGGTTCGAACTCTGGATGGT

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 468; Mature: 467

Protein sequence:

>468_residues
MSSGKIAQVIGPVVDVLFAAGEKLPEINNALVVYKNDERKTKIVLEVALELGDGMVRTIAMESTDGLTRGMEVLDTGRPI
SVPVGKETLGRVFNVLGDTIDLEAPFTEDAERQPIHKKAPTFDELSTSSEILETGIKVIDLLAPYLKGGKVGLFGGAGVG
KTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYWEMKESGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVE
GQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSVTSIQAIYVPADDYTDPAPATAFA
HLDSTTNLERKLVQLGIYPAVDPLASSSRALAPEIVGEEHYAVAAEVKRVLQRYHELQDIIAILGMDELSDEEKTLVARA
RRIQFFLSQNFNVAEQFTGQPGSYVPVAETVRGFKEILDGKYDHLPEDAFRGVGSIEDVIAKAEKMGF

Sequences:

>Translated_468_residues
MSSGKIAQVIGPVVDVLFAAGEKLPEINNALVVYKNDERKTKIVLEVALELGDGMVRTIAMESTDGLTRGMEVLDTGRPI
SVPVGKETLGRVFNVLGDTIDLEAPFTEDAERQPIHKKAPTFDELSTSSEILETGIKVIDLLAPYLKGGKVGLFGGAGVG
KTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYWEMKESGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVE
GQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSVTSIQAIYVPADDYTDPAPATAFA
HLDSTTNLERKLVQLGIYPAVDPLASSSRALAPEIVGEEHYAVAAEVKRVLQRYHELQDIIAILGMDELSDEEKTLVARA
RRIQFFLSQNFNVAEQFTGQPGSYVPVAETVRGFKEILDGKYDHLPEDAFRGVGSIEDVIAKAEKMGF
>Mature_467_residues
SSGKIAQVIGPVVDVLFAAGEKLPEINNALVVYKNDERKTKIVLEVALELGDGMVRTIAMESTDGLTRGMEVLDTGRPIS
VPVGKETLGRVFNVLGDTIDLEAPFTEDAERQPIHKKAPTFDELSTSSEILETGIKVIDLLAPYLKGGKVGLFGGAGVGK
TVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYWEMKESGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEG
QDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSVTSIQAIYVPADDYTDPAPATAFAH
LDSTTNLERKLVQLGIYPAVDPLASSSRALAPEIVGEEHYAVAAEVKRVLQRYHELQDIIAILGMDELSDEEKTLVARAR
RIQFFLSQNFNVAEQFTGQPGSYVPVAETVRGFKEILDGKYDHLPEDAFRGVGSIEDVIAKAEKMGF

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=471, Percent_Identity=68.1528662420382, Blast_Score=629, Evalue=1e-180,
Organism=Homo sapiens, GI19913424, Length=319, Percent_Identity=28.2131661442006, Blast_Score=125, Evalue=8e-29,
Organism=Homo sapiens, GI19913428, Length=341, Percent_Identity=24.633431085044, Blast_Score=96, Evalue=7e-20,
Organism=Homo sapiens, GI50345984, Length=364, Percent_Identity=26.3736263736264, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI4757810, Length=364, Percent_Identity=26.3736263736264, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI19913426, Length=360, Percent_Identity=24.4444444444444, Blast_Score=94, Evalue=2e-19,
Organism=Escherichia coli, GI1790170, Length=466, Percent_Identity=66.3090128755365, Blast_Score=614, Evalue=1e-177,
Organism=Escherichia coli, GI1788251, Length=390, Percent_Identity=28.974358974359, Blast_Score=129, Evalue=6e-31,
Organism=Escherichia coli, GI1790172, Length=319, Percent_Identity=28.8401253918495, Blast_Score=114, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI25144756, Length=471, Percent_Identity=65.3927813163482, Blast_Score=605, Evalue=1e-173,
Organism=Caenorhabditis elegans, GI17565854, Length=353, Percent_Identity=28.8951841359773, Blast_Score=133, Evalue=2e-31,
Organism=Caenorhabditis elegans, GI17510931, Length=372, Percent_Identity=23.9247311827957, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17570191, Length=365, Percent_Identity=24.1095890410959, Blast_Score=102, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI71988080, Length=363, Percent_Identity=25.8953168044077, Blast_Score=93, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI71988063, Length=363, Percent_Identity=25.8953168044077, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI71988074, Length=391, Percent_Identity=24.2966751918159, Blast_Score=80, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6322581, Length=463, Percent_Identity=69.1144708423326, Blast_Score=621, Evalue=1e-179,
Organism=Saccharomyces cerevisiae, GI6319603, Length=385, Percent_Identity=25.974025974026, Blast_Score=102, Evalue=2e-22,
Organism=Saccharomyces cerevisiae, GI6319370, Length=378, Percent_Identity=27.7777777777778, Blast_Score=101, Evalue=3e-22,
Organism=Saccharomyces cerevisiae, GI6320016, Length=262, Percent_Identity=26.3358778625954, Blast_Score=88, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24638766, Length=470, Percent_Identity=67.6595744680851, Blast_Score=623, Evalue=1e-178,
Organism=Drosophila melanogaster, GI28574560, Length=469, Percent_Identity=65.8848614072495, Blast_Score=595, Evalue=1e-170,
Organism=Drosophila melanogaster, GI20129479, Length=373, Percent_Identity=26.8096514745308, Blast_Score=136, Evalue=3e-32,
Organism=Drosophila melanogaster, GI24583988, Length=354, Percent_Identity=27.1186440677966, Blast_Score=127, Evalue=1e-29,
Organism=Drosophila melanogaster, GI24583986, Length=354, Percent_Identity=27.1186440677966, Blast_Score=127, Evalue=1e-29,
Organism=Drosophila melanogaster, GI24583984, Length=354, Percent_Identity=27.1186440677966, Blast_Score=127, Evalue=1e-29,
Organism=Drosophila melanogaster, GI24583992, Length=319, Percent_Identity=27.5862068965517, Blast_Score=124, Evalue=1e-28,
Organism=Drosophila melanogaster, GI281361666, Length=409, Percent_Identity=25.6723716381418, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24646341, Length=409, Percent_Identity=25.6723716381418, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI17136796, Length=409, Percent_Identity=25.6723716381418, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24638768, Length=95, Percent_Identity=58.9473684210526, Blast_Score=100, Evalue=4e-21,
Organism=Drosophila melanogaster, GI24658560, Length=374, Percent_Identity=27.5401069518717, Blast_Score=94, Evalue=2e-19,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 50905; Mature: 50774

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSGKIAQVIGPVVDVLFAAGEKLPEINNALVVYKNDERKTKIVLEVALELGDGMVRTIA
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEE
MESTDGLTRGMEVLDTGRPISVPVGKETLGRVFNVLGDTIDLEAPFTEDAERQPIHKKAP
ECCCCCHHHHHHHHHCCCCEECCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCC
TFDELSTSSEILETGIKVIDLLAPYLKGGKVGLFGGAGVGKTVLIQELIHNIAQEHGGIS
CHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEE
VFAGVGERTREGNDLYWEMKESGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVE
EEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHCCC
GQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSVTSI
CCEEEEEHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEE
QAIYVPADDYTDPAPATAFAHLDSTTNLERKLVQLGIYPAVDPLASSSRALAPEIVGEEH
EEEEECCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCH
YAVAAEVKRVLQRYHELQDIIAILGMDELSDEEKTLVARARRIQFFLSQNFNVAEQFTGQ
HHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCC
PGSYVPVAETVRGFKEILDGKYDHLPEDAFRGVGSIEDVIAKAEKMGF
CCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
SSGKIAQVIGPVVDVLFAAGEKLPEINNALVVYKNDERKTKIVLEVALELGDGMVRTIA
CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEE
MESTDGLTRGMEVLDTGRPISVPVGKETLGRVFNVLGDTIDLEAPFTEDAERQPIHKKAP
ECCCCCHHHHHHHHHCCCCEECCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCC
TFDELSTSSEILETGIKVIDLLAPYLKGGKVGLFGGAGVGKTVLIQELIHNIAQEHGGIS
CHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEE
VFAGVGERTREGNDLYWEMKESGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVE
EEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHCCC
GQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSVTSI
CCEEEEEHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEE
QAIYVPADDYTDPAPATAFAHLDSTTNLERKLVQLGIYPAVDPLASSSRALAPEIVGEEH
EEEEECCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCH
YAVAAEVKRVLQRYHELQDIIAILGMDELSDEEKTLVARARRIQFFLSQNFNVAEQFTGQ
HHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCC
PGSYVPVAETVRGFKEILDGKYDHLPEDAFRGVGSIEDVIAKAEKMGF
CCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA