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The map label for this gene is ybiR [C]

Identifier: 116496216

GI number: 116496216

Start: 2772842

End: 2773942

Strand: Direct

Name: ybiR [C]

Synonym: LSEI_2794

Alternate gene names: 116496216

Gene position: 2772842-2773942 (Clockwise)

Preceding gene: 116496209

Following gene: 116496217

Centisome position: 95.77

GC content: 46.32

Gene sequence:

>1101_bases
ATGATTGTTATTCAGCGTCTGATCAAAGATCGGGTCCTGCAGATCACCGCCTTGTTGGTCGTCATAAGTCTGTTCATTGG
CCGGCCAAAAGCAAGCGACATAAGTTTTGCCACATTATGGTCAATTCTCGCCATGATGACGGTGATTCAAATCTTCGAGC
ACCTACATATTCTTGATTACTGGGCCTATCGACTGACTTCCCGGGCGAAAAACACGCGACAGTTAACGTGGTGGTTTCTT
TTTCTTGCGATTTTTGCCAGCATGTTTCTTTCAAATGACGTGACCGTCTTGACCTTGGTGCCGCTCTATCTGCGGGTTGC
CAAGAAGTATCAGTTACCCGAGATTCTCCCGGTAACCTTGATTGGCATGGCCGCCAACTTCGGAAGCGCCTTCACGCCAT
TTGGCAATACCCACAATATCTTTCTGATGCACCAATTTCAAATTGACTTGCGCCAGTTCTTCGGCTGGTCAATTCCGTTA
CTTGCCGTTAGCTTTTTAGTGTTAGTATTGCTAAGCCTTTTCTTGCGTAATGTGCCTGTCCCGAATGTCCCAGCTGAACA
CATCCATATACAAATGCGGCCGACCATGTTTGCCATTGCCGTTGCGTGTGTCGTCTTCGCTGGGGTCATTGGTCTTGTTC
CTGCTTGGTTAGGGGCTGTTTTGGCGATTGCCTTATCCTTAGCACTGGACCCTAAAGATATGCGAGACGTTGATTACGCG
GTGGTCTTAACGTTTGCTGGCTTTTTCATTATTGTCAGCGTCGTTGGCCAGATTCCATGGGTAATACACTTCCTTGCTGG
TTTGGAAAATTCAGAGGAATCTGTTTATCTTAGTGGTGTTTTCACCAGTCAGGTTATTTCCAACGTCCCGTCTACAGTGC
TGCTGGCACGCTTTACAGGTTATGTCGAGGCTTTATTTTATGGATCGAACATCGGCGGTGTTGGGACACTCGTTGGTTCA
ATGGCTAACTTACTTGTCTTCAAGCAATACATGATTTATGGTAACCGGCCCCATACTCGTTTTTTTGTCGGCTTTACGAT
TTTTAACTTAATTGGTTTGATTTTGTTGGGTTGTGCCGGTTACTGGTTGACGGTTCGTTAA

Upstream 100 bases:

>100_bases
TCTAACCGGGCCTGTTCACGCTCTGCCTGTTTGCCTATTGTCAACGTTCGGATTATGGCGCAAAATAGTCTGGTTGAGGT
TTTTTTAATGAGGTAAATTG

Downstream 100 bases:

>100_bases
GAAGCAATGACCCACCTCAAAAAAGTCAGCCAATTCGACATGCTTCGTTAAAAATCAGGTCATGACAGTAGTCAAATATT
ACATAACACCGGTAATGTAT

Product: di- and tricarboxylate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MIVIQRLIKDRVLQITALLVVISLFIGRPKASDISFATLWSILAMMTVIQIFEHLHILDYWAYRLTSRAKNTRQLTWWFL
FLAIFASMFLSNDVTVLTLVPLYLRVAKKYQLPEILPVTLIGMAANFGSAFTPFGNTHNIFLMHQFQIDLRQFFGWSIPL
LAVSFLVLVLLSLFLRNVPVPNVPAEHIHIQMRPTMFAIAVACVVFAGVIGLVPAWLGAVLAIALSLALDPKDMRDVDYA
VVLTFAGFFIIVSVVGQIPWVIHFLAGLENSEESVYLSGVFTSQVISNVPSTVLLARFTGYVEALFYGSNIGGVGTLVGS
MANLLVFKQYMIYGNRPHTRFFVGFTIFNLIGLILLGCAGYWLTVR

Sequences:

>Translated_366_residues
MIVIQRLIKDRVLQITALLVVISLFIGRPKASDISFATLWSILAMMTVIQIFEHLHILDYWAYRLTSRAKNTRQLTWWFL
FLAIFASMFLSNDVTVLTLVPLYLRVAKKYQLPEILPVTLIGMAANFGSAFTPFGNTHNIFLMHQFQIDLRQFFGWSIPL
LAVSFLVLVLLSLFLRNVPVPNVPAEHIHIQMRPTMFAIAVACVVFAGVIGLVPAWLGAVLAIALSLALDPKDMRDVDYA
VVLTFAGFFIIVSVVGQIPWVIHFLAGLENSEESVYLSGVFTSQVISNVPSTVLLARFTGYVEALFYGSNIGGVGTLVGS
MANLLVFKQYMIYGNRPHTRFFVGFTIFNLIGLILLGCAGYWLTVR
>Mature_366_residues
MIVIQRLIKDRVLQITALLVVISLFIGRPKASDISFATLWSILAMMTVIQIFEHLHILDYWAYRLTSRAKNTRQLTWWFL
FLAIFASMFLSNDVTVLTLVPLYLRVAKKYQLPEILPVTLIGMAANFGSAFTPFGNTHNIFLMHQFQIDLRQFFGWSIPL
LAVSFLVLVLLSLFLRNVPVPNVPAEHIHIQMRPTMFAIAVACVVFAGVIGLVPAWLGAVLAIALSLALDPKDMRDVDYA
VVLTFAGFFIIVSVVGQIPWVIHFLAGLENSEESVYLSGVFTSQVISNVPSTVLLARFTGYVEALFYGSNIGGVGTLVGS
MANLLVFKQYMIYGNRPHTRFFVGFTIFNLIGLILLGCAGYWLTVR

Specific function: Unknown

COG id: COG0471

COG function: function code P; Di- and tricarboxylate transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]

Homologues:

Organism=Escherichia coli, GI1787039, Length=335, Percent_Identity=26.865671641791, Blast_Score=92, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004680 [H]

Pfam domain/function: PF03600 CitMHS [H]

EC number: NA

Molecular weight: Translated: 40888; Mature: 40888

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVIQRLIKDRVLQITALLVVISLFIGRPKASDISFATLWSILAMMTVIQIFEHLHILDY
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
WAYRLTSRAKNTRQLTWWFLFLAIFASMFLSNDVTVLTLVPLYLRVAKKYQLPEILPVTL
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH
IGMAANFGSAFTPFGNTHNIFLMHQFQIDLRQFFGWSIPLLAVSFLVLVLLSLFLRNVPV
HHHHHCCCCCCCCCCCCCEEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
PNVPAEHIHIQMRPTMFAIAVACVVFAGVIGLVPAWLGAVLAIALSLALDPKDMRDVDYA
CCCCHHHEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
VVLTFAGFFIIVSVVGQIPWVIHFLAGLENSEESVYLSGVFTSQVISNVPSTVLLARFTG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHCCHHHHHHHHHH
YVEALFYGSNIGGVGTLVGSMANLLVFKQYMIYGNRPHTRFFVGFTIFNLIGLILLGCAG
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHCC
YWLTVR
CEEEEC
>Mature Secondary Structure
MIVIQRLIKDRVLQITALLVVISLFIGRPKASDISFATLWSILAMMTVIQIFEHLHILDY
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
WAYRLTSRAKNTRQLTWWFLFLAIFASMFLSNDVTVLTLVPLYLRVAKKYQLPEILPVTL
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH
IGMAANFGSAFTPFGNTHNIFLMHQFQIDLRQFFGWSIPLLAVSFLVLVLLSLFLRNVPV
HHHHHCCCCCCCCCCCCCEEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
PNVPAEHIHIQMRPTMFAIAVACVVFAGVIGLVPAWLGAVLAIALSLALDPKDMRDVDYA
CCCCHHHEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
VVLTFAGFFIIVSVVGQIPWVIHFLAGLENSEESVYLSGVFTSQVISNVPSTVLLARFTG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHCCHHHHHHHHHH
YVEALFYGSNIGGVGTLVGSMANLLVFKQYMIYGNRPHTRFFVGFTIFNLIGLILLGCAG
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHCC
YWLTVR
CEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]