| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
Click here to switch to the map view.
The map label for this gene is 116496217
Identifier: 116496217
GI number: 116496217
Start: 2774318
End: 2775148
Strand: Direct
Name: 116496217
Synonym: LSEI_2795
Alternate gene names: NA
Gene position: 2774318-2775148 (Clockwise)
Preceding gene: 116496216
Following gene: 116496220
Centisome position: 95.82
GC content: 49.1
Gene sequence:
>831_bases ATGAAGCGCAGGACGTTGTTTTCGATCATCGTCATCACGCTGACCGCAGGATTTTTTACCTTATTTTACGGTATGCATAG TACTTGGACAGATACCCGGTCAGCGCAGGCCGTTCAAGCCGCTACCGACCAAGTCAATGATTTGTTCAAGGATCAATCGC ATCAATTACCTTCAGACCAGCTAAATAAGCAGGCTATAGCAGCTGCCGAGACCAAATTACAACAGGCTCGTCAGAAGGCC AATGATGCAGACCACGCTGCCGCACTTGCCAGCGCACAAGCCGATGTTGATGCCGCTAAACATATGCTGATTGTTAAAGA TGCTGTCGCTCAAAATGCAACAAAACTGGATGAGCTAAAAACGTTGTCAGATGAGTCGCAGCAAGCATTAACTGAGCTTG CCAAACAGAAACCGACATTTGTCCAAACCTATCAGGAACGGGTGGCACAACTGTCTGATCAAGAAGCGGCTGTCGCGAAA ATCGCCAGTCTTTTTAGTGATACCGATTTTAAAACGCCTAAGCCAAATCTGAATTCGGCACAAGTACAGGCCGCATTAAC TGCTGTTGAAGATTTGGACAATAAACAATTTGCCGCCCAAGTCATGCCGCTGATCAGTACTGCTCAAAATGCCACTTCCA GCGATGACAGTCGTGACCCCGAACCGTCAGCATCATCAGCGCTGCCTAGTTCGGCCGACAGCAGCCCGTCAGCCGTTGCC AGCAGCAGTGATCAAGCCAGTTCAGCAAATGCTAGCGGCAGTGAATCGGAGCAAAGTCAGGCATCCAGCTCAACCTCGAC AGCAACTTCTTCATCTAGCCAGAATCCGTAA
Upstream 100 bases:
>100_bases TCCTGATGTGATGATCAAATTTTAATCATCACATCAGGAGGTGTTGGCACCTTGTCTGCTAAAGATATTGGTTGACGCTC GCTCTTAGGAGGAAGTATTT
Downstream 100 bases:
>100_bases TTTTTTGGATCACTAACCGATACTCAGGCACGCGTTGTCTGTCAAAAAAATGACGATACCGCACACATGCAGACTTGTGC GGATCGTCATTTTTTATTGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 276; Mature: 276
Protein sequence:
>276_residues MKRRTLFSIIVITLTAGFFTLFYGMHSTWTDTRSAQAVQAATDQVNDLFKDQSHQLPSDQLNKQAIAAAETKLQQARQKA NDADHAAALASAQADVDAAKHMLIVKDAVAQNATKLDELKTLSDESQQALTELAKQKPTFVQTYQERVAQLSDQEAAVAK IASLFSDTDFKTPKPNLNSAQVQAALTAVEDLDNKQFAAQVMPLISTAQNATSSDDSRDPEPSASSALPSSADSSPSAVA SSSDQASSANASGSESEQSQASSSTSTATSSSSQNP
Sequences:
>Translated_276_residues MKRRTLFSIIVITLTAGFFTLFYGMHSTWTDTRSAQAVQAATDQVNDLFKDQSHQLPSDQLNKQAIAAAETKLQQARQKA NDADHAAALASAQADVDAAKHMLIVKDAVAQNATKLDELKTLSDESQQALTELAKQKPTFVQTYQERVAQLSDQEAAVAK IASLFSDTDFKTPKPNLNSAQVQAALTAVEDLDNKQFAAQVMPLISTAQNATSSDDSRDPEPSASSALPSSADSSPSAVA SSSDQASSANASGSESEQSQASSSTSTATSSSSQNP >Mature_276_residues MKRRTLFSIIVITLTAGFFTLFYGMHSTWTDTRSAQAVQAATDQVNDLFKDQSHQLPSDQLNKQAIAAAETKLQQARQKA NDADHAAALASAQADVDAAKHMLIVKDAVAQNATKLDELKTLSDESQQALTELAKQKPTFVQTYQERVAQLSDQEAAVAK IASLFSDTDFKTPKPNLNSAQVQAALTAVEDLDNKQFAAQVMPLISTAQNATSSDDSRDPEPSASSALPSSADSSPSAVA SSSDQASSANASGSESEQSQASSSTSTATSSSSQNP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29146; Mature: 29146
Theoretical pI: Translated: 4.53; Mature: 4.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRRTLFSIIVITLTAGFFTLFYGMHSTWTDTRSAQAVQAATDQVNDLFKDQSHQLPSDQ CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHH LNKQAIAAAETKLQQARQKANDADHAAALASAQADVDAAKHMLIVKDAVAQNATKLDELK HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TLSDESQQALTELAKQKPTFVQTYQERVAQLSDQEAAVAKIASLFSDTDFKTPKPNLNSA HHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCHH QVQAALTAVEDLDNKQFAAQVMPLISTAQNATSSDDSRDPEPSASSALPSSADSSPSAVA HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHH SSSDQASSANASGSESEQSQASSSTSTATSSSSQNP CCCCHHCCCCCCCCHHHHHHHHCCCHHCCCCCCCCC >Mature Secondary Structure MKRRTLFSIIVITLTAGFFTLFYGMHSTWTDTRSAQAVQAATDQVNDLFKDQSHQLPSDQ CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHH LNKQAIAAAETKLQQARQKANDADHAAALASAQADVDAAKHMLIVKDAVAQNATKLDELK HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TLSDESQQALTELAKQKPTFVQTYQERVAQLSDQEAAVAKIASLFSDTDFKTPKPNLNSA HHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCHH QVQAALTAVEDLDNKQFAAQVMPLISTAQNATSSDDSRDPEPSASSALPSSADSSPSAVA HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHH SSSDQASSANASGSESEQSQASSSTSTATSSSSQNP CCCCHHCCCCCCCCHHHHHHHHCCCHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA