| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
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The map label for this gene is 116495782
Identifier: 116495782
GI number: 116495782
Start: 2327500
End: 2328600
Strand: Direct
Name: 116495782
Synonym: LSEI_2330
Alternate gene names: NA
Gene position: 2327500-2328600 (Clockwise)
Preceding gene: 116495781
Following gene: 116495783
Centisome position: 80.39
GC content: 49.86
Gene sequence:
>1101_bases ATGGGGACACAATTCGCCTTTGACTGGCGCCAAATCATTCATTCACGAAAAAACATGGCCGTACTCGGGTTGTTCATGGC CGCTTTTATCGTGGCGTTTTTCGCTTTAAGTTGGACCAAACGGCTCGATGTCACTCAAACATCACAAGCAACAGCCAACG CCGCGTTGGCCAACTATGCTGAATATAATCTGGATACGTTGAGTCAAGCACAAAAACCATTATTGGCTAATCTTGACGCC CAAAATTCAGCAACCGGCGTTATTGGTTTGGGCCTGCAGCTTGATGAGCCTGACACTACCCGTAATGGGCTGCTTAGTTT ACGTACAGCGCAGCTAGCCATGCGCCAACATCATTACAAAGCGCTCAACACGATGCCACTGCCACCGTTGCATCAGCTTA CTGGCGATGTGCGGAGCCTGAACGTTTTAAAATCTGAAGGCCGGCCGGCTGCAACAAGCGTTAGCACGAGTGCTTCTTAT ATTGTTTTGGTGTTACCTTATCTCGGCTGGATCATTGGCGCCGCTGCGATATTGCTCAGTTGCGACAGTTGGATCGAGCG GCGGCGACACCGGACACTCATCACTGCTCGTCCTTTGACAGCTGGCCTTGCGGGGAGCAGCCGCCTACTAATGCTTACCG GGTTTTACATCTTAACGCTGCTTGCCGGTTTTGCTTTGATGGTTGCGACACCAGCCCTGATAGCTGGCCTAGGTGACTTC AATTATCCGATCGCCGTCATGGGTACAGCCATACTGCCATTGTGGCAATACATACTTTTGTTTGGCGGCCTGACAATCTT AGCCGGTATTTGGCTCATCAGTTTTAGTATGCTAGTCAATGCTTGGATCACCAACGTTTATCTGACCGCCTTTATCGTCA TGGCAGCCGGATTATTGCCAGTCATGCTGCCACAGCTCTTCCATTTTCTGTGGTTCCTGCCAATGCCATATCTAGACAGT TACGCGACATTAAGCGGTACCTTAGTGGATCGCTTGAACCAGCCACTTGCTAGCGTCGTCATTGGCACTGGTTTGCTGTT TCTCTGGACCTTTGTTAATCTCTTTATCTTTGGCCTACGTGTCAAAAAGGAGGCAGCATGA
Upstream 100 bases:
>100_bases TTTGATTAAAGAAAAATGTGGTATTCTGGTGACACATCGTAACCACGCGTTTTTTGATACCGGAGTCATCTCAGAAAACG CTCACTTTGGAGGGCAATGT
Downstream 100 bases:
>100_bases TGGCTTATTTTCGTTTTCAGTTCCACCAGCTGCTGACTAACCGGAAAAATCTAGCGGTAATTGGTATCGCCTTAGTTGCC CTGATCTGCCAATTTGTCTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 366; Mature: 365
Protein sequence:
>366_residues MGTQFAFDWRQIIHSRKNMAVLGLFMAAFIVAFFALSWTKRLDVTQTSQATANAALANYAEYNLDTLSQAQKPLLANLDA QNSATGVIGLGLQLDEPDTTRNGLLSLRTAQLAMRQHHYKALNTMPLPPLHQLTGDVRSLNVLKSEGRPAATSVSTSASY IVLVLPYLGWIIGAAAILLSCDSWIERRRHRTLITARPLTAGLAGSSRLLMLTGFYILTLLAGFALMVATPALIAGLGDF NYPIAVMGTAILPLWQYILLFGGLTILAGIWLISFSMLVNAWITNVYLTAFIVMAAGLLPVMLPQLFHFLWFLPMPYLDS YATLSGTLVDRLNQPLASVVIGTGLLFLWTFVNLFIFGLRVKKEAA
Sequences:
>Translated_366_residues MGTQFAFDWRQIIHSRKNMAVLGLFMAAFIVAFFALSWTKRLDVTQTSQATANAALANYAEYNLDTLSQAQKPLLANLDA QNSATGVIGLGLQLDEPDTTRNGLLSLRTAQLAMRQHHYKALNTMPLPPLHQLTGDVRSLNVLKSEGRPAATSVSTSASY IVLVLPYLGWIIGAAAILLSCDSWIERRRHRTLITARPLTAGLAGSSRLLMLTGFYILTLLAGFALMVATPALIAGLGDF NYPIAVMGTAILPLWQYILLFGGLTILAGIWLISFSMLVNAWITNVYLTAFIVMAAGLLPVMLPQLFHFLWFLPMPYLDS YATLSGTLVDRLNQPLASVVIGTGLLFLWTFVNLFIFGLRVKKEAA >Mature_365_residues GTQFAFDWRQIIHSRKNMAVLGLFMAAFIVAFFALSWTKRLDVTQTSQATANAALANYAEYNLDTLSQAQKPLLANLDAQ NSATGVIGLGLQLDEPDTTRNGLLSLRTAQLAMRQHHYKALNTMPLPPLHQLTGDVRSLNVLKSEGRPAATSVSTSASYI VLVLPYLGWIIGAAAILLSCDSWIERRRHRTLITARPLTAGLAGSSRLLMLTGFYILTLLAGFALMVATPALIAGLGDFN YPIAVMGTAILPLWQYILLFGGLTILAGIWLISFSMLVNAWITNVYLTAFIVMAAGLLPVMLPQLFHFLWFLPMPYLDSY ATLSGTLVDRLNQPLASVVIGTGLLFLWTFVNLFIFGLRVKKEAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40080; Mature: 39949
Theoretical pI: Translated: 9.90; Mature: 9.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGTQFAFDWRQIIHSRKNMAVLGLFMAAFIVAFFALSWTKRLDVTQTSQATANAALANYA CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH EYNLDTLSQAQKPLLANLDAQNSATGVIGLGLQLDEPDTTRNGLLSLRTAQLAMRQHHYK HCCHHHHHHHCCCHHHCCCCCCCCCEEEEECEEECCCCCCHHHHHHHHHHHHHHHHHHHH ALNTMPLPPLHQLTGDVRSLNVLKSEGRPAATSVSTSASYIVLVLPYLGWIIGAAAILLS HHCCCCCCCHHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH CDSWIERRRHRTLITARPLTAGLAGSSRLLMLTGFYILTLLAGFALMVATPALIAGLGDF HHHHHHHHHHHHEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC NYPIAVMGTAILPLWQYILLFGGLTILAGIWLISFSMLVNAWITNVYLTAFIVMAAGLLP CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VMLPQLFHFLWFLPMPYLDSYATLSGTLVDRLNQPLASVVIGTGLLFLWTFVNLFIFGLR HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH VKKEAA HHHCCC >Mature Secondary Structure GTQFAFDWRQIIHSRKNMAVLGLFMAAFIVAFFALSWTKRLDVTQTSQATANAALANYA CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH EYNLDTLSQAQKPLLANLDAQNSATGVIGLGLQLDEPDTTRNGLLSLRTAQLAMRQHHYK HCCHHHHHHHCCCHHHCCCCCCCCCEEEEECEEECCCCCCHHHHHHHHHHHHHHHHHHHH ALNTMPLPPLHQLTGDVRSLNVLKSEGRPAATSVSTSASYIVLVLPYLGWIIGAAAILLS HHCCCCCCCHHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH CDSWIERRRHRTLITARPLTAGLAGSSRLLMLTGFYILTLLAGFALMVATPALIAGLGDF HHHHHHHHHHHHEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC NYPIAVMGTAILPLWQYILLFGGLTILAGIWLISFSMLVNAWITNVYLTAFIVMAAGLLP CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VMLPQLFHFLWFLPMPYLDSYATLSGTLVDRLNQPLASVVIGTGLLFLWTFVNLFIFGLR HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH VKKEAA HHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA