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The map label for this gene is ccpB [H]

Identifier: 116495721

GI number: 116495721

Start: 2262987

End: 2263919

Strand: Direct

Name: ccpB [H]

Synonym: LSEI_2269

Alternate gene names: 116495721

Gene position: 2262987-2263919 (Clockwise)

Preceding gene: 116495720

Following gene: 116495723

Centisome position: 78.16

GC content: 48.77

Gene sequence:

>933_bases
ATGGCGAATATTCATGACATTGCTCGACTATCCGGTTTCTCAACGGCAACGGTTTCGCGCGTCATCAATCAGCAACATTA
TGTAGCGCCTTCAACCCGCGCAGCGATTCAAGCAGTGATCGATCAACTTGATTACGTACCAAGCACAATGGCACAAAACC
TTAGCGCAGGCAAAACGCGGACAATCGGGGTCATCTTGCCGCACACCGATCATCCCTATTTTGAACAGCTTGTGACCGGC
ATTTTGAATGCAGCAATGGCCGGCAATTATCATGCGGTGATCCTGCCATCTCGCTATGATCAGTCACTCGAACAAGACTA
TTTAGAAGACTTACGCCGTCATGCATATGATGGCTTGATCTTCACGTCTCATGGTCTTGGCCTGCGCACAATTGCTAAGT
ATCAAAAATATGGCCCTATTGTGGTTTGCGAAAATCCGGGAAAAATCAAACTCGCCGCCGCTTACGCCGACCGAACACCT
GCTTATCAAGAGGCATTCCAGTGGATGGGTAGCCAAGGCTACAGCAAAATCGCCTTGCTGCTAAGTCGGCCCTATGCCCA
AAGTGCGACTAGTAAACTTACCATTAACAGCTATGTGGATGTGTTCGGTAAACGTCCTTCTGACGAAATGATTGTCTATC
ACATGCGAACCTTCGAAGATGGCTATCAAGCTGGTGCGCGGTTAGTCAATGAGCATCCAGACTTTATCCTCGGCAATGGG
GACGATATCACGGCCGGTCTTCGCCAGTACTTCGTCGACCATCACCTGCCCATCCCTCCTTTAATGGGTCAAGAGAATCA
GCTCTCCAGTCGATTACTGCAAATGAGTACGATCGATCATCATGTTACAGCCATCGGTGCAGCAGCGTTAAAACTGGCCT
TGCGCGATGACATTGCTCAGACGGTGATTCAATCCGATTTGATTTTACGGTAA

Upstream 100 bases:

>100_bases
AGTCGGCATATCAGGGTCTAAAACAAAATGACCACTGACACGTCGGCTTTTTGTACGCTTGGCTTTAACTGCTTGTTATA
CTGGAACTGGAGGTGCTTTT

Downstream 100 bases:

>100_bases
GTATATGACAATAAAAAGCAGCAACCTGCCATGGCTTCAAAGCCATGATAGGTTGCTGCTTTTCTTTTTGTCGATACGCT
GCTGCCCTAAACGCAACGCA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MANIHDIARLSGFSTATVSRVINQQHYVAPSTRAAIQAVIDQLDYVPSTMAQNLSAGKTRTIGVILPHTDHPYFEQLVTG
ILNAAMAGNYHAVILPSRYDQSLEQDYLEDLRRHAYDGLIFTSHGLGLRTIAKYQKYGPIVVCENPGKIKLAAAYADRTP
AYQEAFQWMGSQGYSKIALLLSRPYAQSATSKLTINSYVDVFGKRPSDEMIVYHMRTFEDGYQAGARLVNEHPDFILGNG
DDITAGLRQYFVDHHLPIPPLMGQENQLSSRLLQMSTIDHHVTAIGAAALKLALRDDIAQTVIQSDLILR

Sequences:

>Translated_310_residues
MANIHDIARLSGFSTATVSRVINQQHYVAPSTRAAIQAVIDQLDYVPSTMAQNLSAGKTRTIGVILPHTDHPYFEQLVTG
ILNAAMAGNYHAVILPSRYDQSLEQDYLEDLRRHAYDGLIFTSHGLGLRTIAKYQKYGPIVVCENPGKIKLAAAYADRTP
AYQEAFQWMGSQGYSKIALLLSRPYAQSATSKLTINSYVDVFGKRPSDEMIVYHMRTFEDGYQAGARLVNEHPDFILGNG
DDITAGLRQYFVDHHLPIPPLMGQENQLSSRLLQMSTIDHHVTAIGAAALKLALRDDIAQTVIQSDLILR
>Mature_309_residues
ANIHDIARLSGFSTATVSRVINQQHYVAPSTRAAIQAVIDQLDYVPSTMAQNLSAGKTRTIGVILPHTDHPYFEQLVTGI
LNAAMAGNYHAVILPSRYDQSLEQDYLEDLRRHAYDGLIFTSHGLGLRTIAKYQKYGPIVVCENPGKIKLAAAYADRTPA
YQEAFQWMGSQGYSKIALLLSRPYAQSATSKLTINSYVDVFGKRPSDEMIVYHMRTFEDGYQAGARLVNEHPDFILGNGD
DITAGLRQYFVDHHLPIPPLMGQENQLSSRLLQMSTIDHHVTAIGAAALKLALRDDIAQTVIQSDLILR

Specific function: Transcriptional regulator involved in catabolite repression of several operons [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=121, Percent_Identity=34.7107438016529, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1789202, Length=285, Percent_Identity=26.6666666666667, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787948, Length=313, Percent_Identity=23.961661341853, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788474, Length=159, Percent_Identity=31.4465408805031, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1790689, Length=255, Percent_Identity=23.5294117647059, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1790369, Length=181, Percent_Identity=24.8618784530387, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI48994940, Length=139, Percent_Identity=30.9352517985612, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790715, Length=185, Percent_Identity=24.3243243243243, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 34385; Mature: 34253

Theoretical pI: Translated: 7.01; Mature: 7.01

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANIHDIARLSGFSTATVSRVINQQHYVAPSTRAAIQAVIDQLDYVPSTMAQNLSAGKTR
CCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCE
TIGVILPHTDHPYFEQLVTGILNAAMAGNYHAVILPSRYDQSLEQDYLEDLRRHAYDGLI
EEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCEE
FTSHGLGLRTIAKYQKYGPIVVCENPGKIKLAAAYADRTPAYQEAFQWMGSQGYSKIALL
EECCCCCHHHHHHHHHCCCEEEECCCCCEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHH
LSRPYAQSATSKLTINSYVDVFGKRPSDEMIVYHMRTFEDGYQAGARLVNEHPDFILGNG
HHCCCHHHCCCEEEHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCEEEECC
DDITAGLRQYFVDHHLPIPPLMGQENQLSSRLLQMSTIDHHVTAIGAAALKLALRDDIAQ
CHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVIQSDLILR
HHHHHHHCCC
>Mature Secondary Structure 
ANIHDIARLSGFSTATVSRVINQQHYVAPSTRAAIQAVIDQLDYVPSTMAQNLSAGKTR
CCHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCE
TIGVILPHTDHPYFEQLVTGILNAAMAGNYHAVILPSRYDQSLEQDYLEDLRRHAYDGLI
EEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCEE
FTSHGLGLRTIAKYQKYGPIVVCENPGKIKLAAAYADRTPAYQEAFQWMGSQGYSKIALL
EECCCCCHHHHHHHHHCCCEEEECCCCCEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHH
LSRPYAQSATSKLTINSYVDVFGKRPSDEMIVYHMRTFEDGYQAGARLVNEHPDFILGNG
HHCCCHHHCCCEEEHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCEEEECC
DDITAGLRQYFVDHHLPIPPLMGQENQLSSRLLQMSTIDHHVTAIGAAALKLALRDDIAQ
CHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVIQSDLILR
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 8011666; 9457849 [H]