| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
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The map label for this gene is 116495319
Identifier: 116495319
GI number: 116495319
Start: 1850309
End: 1850734
Strand: Direct
Name: 116495319
Synonym: LSEI_1852
Alternate gene names: NA
Gene position: 1850309-1850734 (Clockwise)
Preceding gene: 116495317
Following gene: 116495335
Centisome position: 63.91
GC content: 46.95
Gene sequence:
>426_bases ATGACTTATGAAGAAAAAATCGGCACCGAAAGATTCGATGCCATGGTGGCGGATTTTTTCGCAAATCGTTACTTTGATCG CGGCATGCGTAAATGGCAAGGCTACTATCTTTCTGATCATACAGCCGCTTTAAAGAAGCAATCTAAAAGTGAAGCGCTGG TTTATCCCCCGCTGCCCCTTCAGGATCAAGCGGTCATTCGCGCAATCTTGCTACAAGCCTATGCAGAAGGCCAAACAGTA ACAGCCCAGCTTAACCTGCAAACGCCTAGTGGTCAGATGCTGCCACCGATTCGCGGCAAGGTTGGCGGTTTAACTGACAG TGACGTGGTTAATATTGCGGATCAAAATATGGCAATCGGATCAATTCGGCACATCGAACTCATCCCATTTGCTGCATCAA CGCATCAAAAAAATACGCCAGACTAA
Upstream 100 bases:
>100_bases GCGGCATTCTCGCTGTCATCTTTTTGTAACATTTAAAAAGCGGTGGTTTCCTCTTGTTGGAGCAAACATATGTTCGTATA ATCGATTTGAGGTGATCATC
Downstream 100 bases:
>100_bases GGTAGTCGGCCGTACCGCCGGGGCTCAAATTTCGTGCAATCATTTCGGCGTTTAAAGCGCGCAACCCATTAGGTAGCCGG GACGCCGGTACATGTAACAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 141; Mature: 140
Protein sequence:
>141_residues MTYEEKIGTERFDAMVADFFANRYFDRGMRKWQGYYLSDHTAALKKQSKSEALVYPPLPLQDQAVIRAILLQAYAEGQTV TAQLNLQTPSGQMLPPIRGKVGGLTDSDVVNIADQNMAIGSIRHIELIPFAASTHQKNTPD
Sequences:
>Translated_141_residues MTYEEKIGTERFDAMVADFFANRYFDRGMRKWQGYYLSDHTAALKKQSKSEALVYPPLPLQDQAVIRAILLQAYAEGQTV TAQLNLQTPSGQMLPPIRGKVGGLTDSDVVNIADQNMAIGSIRHIELIPFAASTHQKNTPD >Mature_140_residues TYEEKIGTERFDAMVADFFANRYFDRGMRKWQGYYLSDHTAALKKQSKSEALVYPPLPLQDQAVIRAILLQAYAEGQTVT AQLNLQTPSGQMLPPIRGKVGGLTDSDVVNIADQNMAIGSIRHIELIPFAASTHQKNTPD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15714; Mature: 15583
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTYEEKIGTERFDAMVADFFANRYFDRGMRKWQGYYLSDHTAALKKQSKSEALVYPPLPL CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHCCCCCEEEECCCCC QDQAVIRAILLQAYAEGQTVTAQLNLQTPSGQMLPPIRGKVGGLTDSDVVNIADQNMAIG CHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEC SIRHIELIPFAASTHQKNTPD CEEEEEEEEECCCCCCCCCCC >Mature Secondary Structure TYEEKIGTERFDAMVADFFANRYFDRGMRKWQGYYLSDHTAALKKQSKSEALVYPPLPL CCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHCCCCCEEEECCCCC QDQAVIRAILLQAYAEGQTVTAQLNLQTPSGQMLPPIRGKVGGLTDSDVVNIADQNMAIG CHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEC SIRHIELIPFAASTHQKNTPD CEEEEEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA