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The map label for this gene is sufC [C]

Identifier: 116494675

GI number: 116494675

Start: 1162351

End: 1163118

Strand: Direct

Name: sufC [C]

Synonym: LSEI_1180

Alternate gene names: 116494675

Gene position: 1162351-1163118 (Clockwise)

Preceding gene: 116494674

Following gene: 116494676

Centisome position: 40.15

GC content: 45.57

Gene sequence:

>768_bases
GTGCACACACTTGAGATTAAGGATTTACATGTCAAAATTAAAGCAGAACCTGAGCATCCGGAGATTTTGACCGGCGTTAA
TTTAAAGTTAGCGACTGGTGAGATTCATGCCATTATGGGTCCGAACGGGACAGGAAAATCAACATTAGCCGAGACGATCA
TGGGCAATCCTGCTTATGAAGTGACTCAAGGCGATGTCTTAATTGATGGTCAGTCTATTTTAGACATGGCAGTTGATGAA
CGCGCGCGAGCCGGGCTTTTTCTAGGGATGCAGTACCCGCAAGAAATTGCTGGTGTTACCAATGCCGAGTTTATTCGGGC
GGCGATCAATGCACGCCGGCCAGAAGATGATCAGATTCGCATCACCGACTTTTTAAAGCAATTGGACGACACAATGGCGA
CCCTCGAAATGCCGGAATCCATGGCGGATCGATATTTGAACCAAGGCTTTTCCGGTGGTGAAAAGAAACGCAATGAAATT
CTACAGTTGATGATGATTCACCCGCACTTTGGTTTGTTGGATGAAATTGATTCCGGCTTGGATATTGATGCACTGCGGAT
TGTTGCCAAAGGCGTCAACTTATTGCGTGGACCAGATTTTGGCAGCATGATTATTACGCATTATCAACGGCTATTGGATT
ACATCATTCCCGATGTTGTGCATGTGATGAAAGGTGGCCGAATTATTGAAAGTGGCGGCCCAGAACTTGCTAAAGAATTG
GAGAAGACTGGCTACGAACACCTTAAAGTAGGTGATCAAAATGGCTGA

Upstream 100 bases:

>100_bases
GATAGCGTTCTGCTTTTTTTTGAACGCGTTTGCCGCTGTTCTTTTTATGACGTAGAATGGCGATATAACTAAAAGTCAAA
TTCCAGTCGGGGGTATCATT

Downstream 100 bases:

>100_bases
AGCAGTGACTTTACCGGCACCTAACTTGCCCAAGTTTCCTTTAGCTCGGTATTTAAAACTTCAGCCTGATGCCGTCCTAG
ACCGTGTGATTCTACACGCA

Product: Fe-S cluster assembly ABC-type transport system, ATPase component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MHTLEIKDLHVKIKAEPEHPEILTGVNLKLATGEIHAIMGPNGTGKSTLAETIMGNPAYEVTQGDVLIDGQSILDMAVDE
RARAGLFLGMQYPQEIAGVTNAEFIRAAINARRPEDDQIRITDFLKQLDDTMATLEMPESMADRYLNQGFSGGEKKRNEI
LQLMMIHPHFGLLDEIDSGLDIDALRIVAKGVNLLRGPDFGSMIITHYQRLLDYIIPDVVHVMKGGRIIESGGPELAKEL
EKTGYEHLKVGDQNG

Sequences:

>Translated_255_residues
MHTLEIKDLHVKIKAEPEHPEILTGVNLKLATGEIHAIMGPNGTGKSTLAETIMGNPAYEVTQGDVLIDGQSILDMAVDE
RARAGLFLGMQYPQEIAGVTNAEFIRAAINARRPEDDQIRITDFLKQLDDTMATLEMPESMADRYLNQGFSGGEKKRNEI
LQLMMIHPHFGLLDEIDSGLDIDALRIVAKGVNLLRGPDFGSMIITHYQRLLDYIIPDVVHVMKGGRIIESGGPELAKEL
EKTGYEHLKVGDQNG
>Mature_255_residues
MHTLEIKDLHVKIKAEPEHPEILTGVNLKLATGEIHAIMGPNGTGKSTLAETIMGNPAYEVTQGDVLIDGQSILDMAVDE
RARAGLFLGMQYPQEIAGVTNAEFIRAAINARRPEDDQIRITDFLKQLDDTMATLEMPESMADRYLNQGFSGGEKKRNEI
LQLMMIHPHFGLLDEIDSGLDIDALRIVAKGVNLLRGPDFGSMIITHYQRLLDYIIPDVVHVMKGGRIIESGGPELAKEL
EKTGYEHLKVGDQNG

Specific function: Unknown

COG id: COG0396

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI4505771, Length=213, Percent_Identity=29.1079812206573, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI9961252, Length=213, Percent_Identity=29.1079812206573, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI42741659, Length=220, Percent_Identity=28.6363636363636, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI9961250, Length=245, Percent_Identity=28.1632653061224, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1787972, Length=247, Percent_Identity=50.2024291497976, Blast_Score=235, Evalue=3e-63,
Organism=Escherichia coli, GI1787029, Length=221, Percent_Identity=28.9592760180996, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789891, Length=220, Percent_Identity=26.8181818181818, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI87081709, Length=222, Percent_Identity=24.3243243243243, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1787500, Length=237, Percent_Identity=28.2700421940928, Blast_Score=65, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI193209708, Length=234, Percent_Identity=29.4871794871795, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17541710, Length=222, Percent_Identity=29.2792792792793, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI212646699, Length=237, Percent_Identity=27.8481012658228, Blast_Score=74, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010230 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 28152; Mature: 28152

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHTLEIKDLHVKIKAEPEHPEILTGVNLKLATGEIHAIMGPNGTGKSTLAETIMGNPAYE
CCCEEEEEEEEEEEECCCCCCEEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCEE
VTQGDVLIDGQSILDMAVDERARAGLFLGMQYPQEIAGVTNAEFIRAAINARRPEDDQIR
EECCCEEECCHHHHHHHHHHHHHCCEEEECCCHHHHHCCCHHHHHHHHHHCCCCCCCCCH
ITDFLKQLDDTMATLEMPESMADRYLNQGFSGGEKKRNEILQLMMIHPHFGLLDEIDSGL
HHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCC
DIDALRIVAKGVNLLRGPDFGSMIITHYQRLLDYIIPDVVHVMKGGRIIESGGPELAKEL
CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHH
EKTGYEHLKVGDQNG
HHCCCCEEECCCCCC
>Mature Secondary Structure
MHTLEIKDLHVKIKAEPEHPEILTGVNLKLATGEIHAIMGPNGTGKSTLAETIMGNPAYE
CCCEEEEEEEEEEEECCCCCCEEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCEE
VTQGDVLIDGQSILDMAVDERARAGLFLGMQYPQEIAGVTNAEFIRAAINARRPEDDQIR
EECCCEEECCHHHHHHHHHHHHHCCEEEECCCHHHHHCCCHHHHHHHHHHCCCCCCCCCH
ITDFLKQLDDTMATLEMPESMADRYLNQGFSGGEKKRNEILQLMMIHPHFGLLDEIDSGL
HHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCC
DIDALRIVAKGVNLLRGPDFGSMIITHYQRLLDYIIPDVVHVMKGGRIIESGGPELAKEL
CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHH
EKTGYEHLKVGDQNG
HHCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12122206; 12799345 [H]