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The map label for this gene is sufD [H]

Identifier: 116494676

GI number: 116494676

Start: 1163111

End: 1164142

Strand: Direct

Name: sufD [H]

Synonym: LSEI_1181

Alternate gene names: 116494676

Gene position: 1163111-1164142 (Clockwise)

Preceding gene: 116494675

Following gene: 116494677

Centisome position: 40.17

GC content: 50.78

Gene sequence:

>1032_bases
ATGGCTGAAGCAGTGACTTTACCGGCACCTAACTTGCCCAAGTTTCCTTTAGCTCGGTATTTAAAACTTCAGCCTGATGC
CGTCCTAGACCGTGTGATTCTACACGCACCGCAATCGGTTGCCTATGCAGCAGGCTCCAGTGAGGTTCAACGGTTCACCC
CAGTCACGTCATTGGATGCTTGGTTACTTGCACACCCCCAAGGCGCGACCACGATTGATATTCCGGCCCATTTTGTAAGC
GGTGATGAGCCGATTGTCTTGACTGGTCCTAAGCAAGCGGGTGGACTGCTTTATGTTCATGTCGGCAAAGGCGCTAAAGT
CACGATTCAGGAAAAATGGGCGAGCGGCGGCAATGTTTTAGGCGTTTGGCTTGTGTTGGTTATTGATGCCGATGCCGAAG
TCAGCTGGCTGAGTTATGACAGTTTTACAGCTGAGACCGTGATTGCAAACCGTACCGCCACGCTTGGTGCCAATGCTAAA
TTGAATTGGACCTTGGCAGGGTTTTCGCGAAACTCCGGCCTCAACCGGGTGGATGTCCGCTTATTGGGCCAAAATGCCGA
GGCAACCGTCAACGTGGGTGTGCTTGCGGCAGGAAGTCAACATGTCAGTTACACGACCTCGGTAACCAATGAAGCGCAAC
ACACAGTAGGGCATATTAACCAACGTGGCGTCATTACTGGCAGTGCCCATTTATTATTCAATGGGATTGGTCACATCATC
AAAGGTGCACGTGGCAGTGATGCCCAACAAGAAAATCGAGTCTTGATGTTGTCGCCACATGCGGAAGGTGATGCCAATCC
GATTCTGTTAATTGACGAAAATGACGTCACCGCAGGACATGCGGCTTCAGTGACGCGTGTGAATGCTGATCAGCTATACT
ATCTCATGAGCCGTGGTTTATCTGCGACATTAGCGAAACGGTTGGTCATTCGCGGTTTCCTTGAAGGCGGCTTGGCTGAA
ATTGATGATGTCCGACTGAAGAAAGAACTCTTCGCAACGATTGATCGAACGCTGGTGGCTGAAGATGCGTGA

Upstream 100 bases:

>100_bases
CATGTGATGAAAGGTGGCCGAATTATTGAAAGTGGCGGCCCAGAACTTGCTAAAGAATTGGAGAAGACTGGCTACGAACA
CCTTAAAGTAGGTGATCAAA

Downstream 100 bases:

>100_bases
ACAATTTCCATTTTTTAAAGCTCATCCCGAGCTGGTCTATCTAGATACGGCGGCGACTTCTCAGAAACCGCAAGCTTTAC
TAGATGCTATTCAAAATTAC

Product: Fe-S cluster assembly ABC-type transport system, permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 342

Protein sequence:

>343_residues
MAEAVTLPAPNLPKFPLARYLKLQPDAVLDRVILHAPQSVAYAAGSSEVQRFTPVTSLDAWLLAHPQGATTIDIPAHFVS
GDEPIVLTGPKQAGGLLYVHVGKGAKVTIQEKWASGGNVLGVWLVLVIDADAEVSWLSYDSFTAETVIANRTATLGANAK
LNWTLAGFSRNSGLNRVDVRLLGQNAEATVNVGVLAAGSQHVSYTTSVTNEAQHTVGHINQRGVITGSAHLLFNGIGHII
KGARGSDAQQENRVLMLSPHAEGDANPILLIDENDVTAGHAASVTRVNADQLYYLMSRGLSATLAKRLVIRGFLEGGLAE
IDDVRLKKELFATIDRTLVAEDA

Sequences:

>Translated_343_residues
MAEAVTLPAPNLPKFPLARYLKLQPDAVLDRVILHAPQSVAYAAGSSEVQRFTPVTSLDAWLLAHPQGATTIDIPAHFVS
GDEPIVLTGPKQAGGLLYVHVGKGAKVTIQEKWASGGNVLGVWLVLVIDADAEVSWLSYDSFTAETVIANRTATLGANAK
LNWTLAGFSRNSGLNRVDVRLLGQNAEATVNVGVLAAGSQHVSYTTSVTNEAQHTVGHINQRGVITGSAHLLFNGIGHII
KGARGSDAQQENRVLMLSPHAEGDANPILLIDENDVTAGHAASVTRVNADQLYYLMSRGLSATLAKRLVIRGFLEGGLAE
IDDVRLKKELFATIDRTLVAEDA
>Mature_342_residues
AEAVTLPAPNLPKFPLARYLKLQPDAVLDRVILHAPQSVAYAAGSSEVQRFTPVTSLDAWLLAHPQGATTIDIPAHFVSG
DEPIVLTGPKQAGGLLYVHVGKGAKVTIQEKWASGGNVLGVWLVLVIDADAEVSWLSYDSFTAETVIANRTATLGANAKL
NWTLAGFSRNSGLNRVDVRLLGQNAEATVNVGVLAAGSQHVSYTTSVTNEAQHTVGHINQRGVITGSAHLLFNGIGHIIK
GARGSDAQQENRVLMLSPHAEGDANPILLIDENDVTAGHAASVTRVNADQLYYLMSRGLSATLAKRLVIRGFLEGGLAEI
DDVRLKKELFATIDRTLVAEDA

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI1787971, Length=130, Percent_Identity=30, Blast_Score=68, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 36470; Mature: 36339

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEAVTLPAPNLPKFPLARYLKLQPDAVLDRVILHAPQSVAYAAGSSEVQRFTPVTSLDA
CCCEEECCCCCCCCCCHHHHEECCCHHHHHHHHHCCCCHHEEECCCCHHHHHCCCCCCCE
WLLAHPQGATTIDIPAHFVSGDEPIVLTGPKQAGGLLYVHVGKGAKVTIQEKWASGGNVL
EEEECCCCCEEEECCCEEECCCCCEEEECCCCCCCEEEEEECCCCEEEEEECCCCCCCEE
GVWLVLVIDADAEVSWLSYDSFTAETVIANRTATLGANAKLNWTLAGFSRNSGLNRVDVR
EEEEEEEECCCCCEEEEECCCCCEEEEEECCCEEECCCCEEEEEEEECCCCCCCCEEEEE
LLGQNAEATVNVGVLAAGSQHVSYTTSVTNEAQHTVGHINQRGVITGSAHLLFNGIGHII
EECCCCCEEEEEEEEEECCCCEEEEECCCCCHHHHHHCCCCCCEEECCHHHHHHHHHHHH
KGARGSDAQQENRVLMLSPHAEGDANPILLIDENDVTAGHAASVTRVNADQLYYLMSRGL
CCCCCCCCHHHCCEEEECCCCCCCCCEEEEECCCCCCCCCCCEEEEECHHHHHHHHHCCC
SATLAKRLVIRGFLEGGLAEIDDVRLKKELFATIDRTLVAEDA
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEECCC
>Mature Secondary Structure 
AEAVTLPAPNLPKFPLARYLKLQPDAVLDRVILHAPQSVAYAAGSSEVQRFTPVTSLDA
CCEEECCCCCCCCCCHHHHEECCCHHHHHHHHHCCCCHHEEECCCCHHHHHCCCCCCCE
WLLAHPQGATTIDIPAHFVSGDEPIVLTGPKQAGGLLYVHVGKGAKVTIQEKWASGGNVL
EEEECCCCCEEEECCCEEECCCCCEEEECCCCCCCEEEEEECCCCEEEEEECCCCCCCEE
GVWLVLVIDADAEVSWLSYDSFTAETVIANRTATLGANAKLNWTLAGFSRNSGLNRVDVR
EEEEEEEECCCCCEEEEECCCCCEEEEEECCCEEECCCCEEEEEEEECCCCCCCCEEEEE
LLGQNAEATVNVGVLAAGSQHVSYTTSVTNEAQHTVGHINQRGVITGSAHLLFNGIGHII
EECCCCCEEEEEEEEEECCCCEEEEECCCCCHHHHHHCCCCCCEEECCHHHHHHHHHHHH
KGARGSDAQQENRVLMLSPHAEGDANPILLIDENDVTAGHAASVTRVNADQLYYLMSRGL
CCCCCCCCHHHCCEEEECCCCCCCCCEEEEECCCCCCCCCCCEEEEECHHHHHHHHHCCC
SATLAKRLVIRGFLEGGLAEIDDVRLKKELFATIDRTLVAEDA
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]