Click here to switch to the map view.

The map label for this gene is atpF

Identifier: 116494658

GI number: 116494658

Start: 1146338

End: 1146826

Strand: Direct

Name: atpF

Synonym: LSEI_1162

Alternate gene names: 116494658

Gene position: 1146338-1146826 (Clockwise)

Preceding gene: 116494657

Following gene: 116494659

Centisome position: 39.59

GC content: 45.81

Gene sequence:

>489_bases
ATGACTTTAGGTGACACACTCTTCACACTAGTCACATTTCTGGTTCTGATGCTAGCCGTCGGGAAAGTGGCCTGGAAGCC
AGTTTCAAAAATGATGGCGGATCGTCAGCAGAAAATTTCCGGAGATCTGGATTATGCTGAAAAGTCACGCAAAGACGCAG
ATGCTTTAGTAGCTAAACGTCAAGAAGAACTGCAACACTCCCAAGCCGATGCCGTTAAGATCGTGAATCAAGCCAAGGAA
AATGGCGAGAAACTGCGGCAATCATTGGTCGACGCTGCCAACGCAGAAGTCACCACGATGAAGAAGAATGCGCAAACCGA
AATTGATCAAGCACGTAAAGATGCCTTGGCCAGTGCCAAAAATGATGTGGCAGACCTAAGTTTGACCATCGCGCAAAAAC
TGATCGGTAAGGAACTCAATGCAGACGATCAAAAAGGTTTGATCGATGACTATATTAAACGGTTAGGTGATGCAAATGGC
AGTCACTAA

Upstream 100 bases:

>100_bases
GTTGGCTTGATTGAAGCCGTTCCGATCTTGTCTGTCGTTGTTGCCTTCATGTTGATGAGTCGTTAATCTGGTTCATCAAT
AAAGAAGGGAGTGGCAAAAA

Downstream 100 bases:

>100_bases
TCAGATGGTCGCACCCCGCTATGCCAAAGCTTTATTGGAAGCGGCACAAGATCAAAATCAGGTGGAGACGGTCCATGAAG
AGTTACAAGCGCTACAGTCT

Product: F0F1-type ATP synthase, subunit b

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F(0) sector subunit b; ATPase subunit I; F-type ATPase subunit b; F-ATPase subunit b

Number of amino acids: Translated: 162; Mature: 161

Protein sequence:

>162_residues
MTLGDTLFTLVTFLVLMLAVGKVAWKPVSKMMADRQQKISGDLDYAEKSRKDADALVAKRQEELQHSQADAVKIVNQAKE
NGEKLRQSLVDAANAEVTTMKKNAQTEIDQARKDALASAKNDVADLSLTIAQKLIGKELNADDQKGLIDDYIKRLGDANG
SH

Sequences:

>Translated_162_residues
MTLGDTLFTLVTFLVLMLAVGKVAWKPVSKMMADRQQKISGDLDYAEKSRKDADALVAKRQEELQHSQADAVKIVNQAKE
NGEKLRQSLVDAANAEVTTMKKNAQTEIDQARKDALASAKNDVADLSLTIAQKLIGKELNADDQKGLIDDYIKRLGDANG
SH
>Mature_161_residues
TLGDTLFTLVTFLVLMLAVGKVAWKPVSKMMADRQQKISGDLDYAEKSRKDADALVAKRQEELQHSQADAVKIVNQAKEN
GEKLRQSLVDAANAEVTTMKKNAQTEIDQARKDALASAKNDVADLSLTIAQKLIGKELNADDQKGLIDDYIKRLGDANGS
H

Specific function: Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)

COG id: COG0711

COG function: function code C; F0F1-type ATP synthase, subunit b

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase B chain family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPF_LACC3 (Q03A22)

Other databases:

- EMBL:   CP000423
- RefSeq:   YP_806392.1
- STRING:   Q03A22
- GeneID:   4420198
- GenomeReviews:   CP000423_GR
- KEGG:   lca:LSEI_1162
- eggNOG:   COG0711
- HOGENOM:   HBG617328
- OMA:   NPGLIFW
- ProtClustDB:   CLSK2317916
- BioCyc:   LCAS321967:LSEI_1162-MONOMER
- HAMAP:   MF_01398
- InterPro:   IPR002146
- InterPro:   IPR005864
- TIGRFAMs:   TIGR01144

Pfam domain/function: PF00430 ATP-synt_B

EC number: 3.6.3.14

Molecular weight: Translated: 17739; Mature: 17608

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x15129aa0)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLGDTLFTLVTFLVLMLAVGKVAWKPVSKMMADRQQKISGDLDYAEKSRKDADALVAKR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
QEELQHSQADAVKIVNQAKENGEKLRQSLVDAANAEVTTMKKNAQTEIDQARKDALASAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
NDVADLSLTIAQKLIGKELNADDQKGLIDDYIKRLGDANGSH
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCH
>Mature Secondary Structure 
TLGDTLFTLVTFLVLMLAVGKVAWKPVSKMMADRQQKISGDLDYAEKSRKDADALVAKR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
QEELQHSQADAVKIVNQAKENGEKLRQSLVDAANAEVTTMKKNAQTEIDQARKDALASAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
NDVADLSLTIAQKLIGKELNADDQKGLIDDYIKRLGDANGSH
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA