| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
Click here to switch to the map view.
The map label for this gene is pgcA [H]
Identifier: 116494456
GI number: 116494456
Start: 927511
End: 929238
Strand: Direct
Name: pgcA [H]
Synonym: LSEI_0949
Alternate gene names: 116494456
Gene position: 927511-929238 (Clockwise)
Preceding gene: 116494455
Following gene: 116494457
Centisome position: 32.04
GC content: 47.74
Gene sequence:
>1728_bases GTGAGTTATCGTGATACGTATCAACAATGGGTCGACGAACCGACCCTTGATCCGGAGCTGAAAGCTGATCTTAAGAATAT GGCTGATGATGAGACGACTAAGGAACAGGCATTTGCTGCTCCTATGGCGTTTGGCACGGCAGGCATGCGTGGTGTTCTTG GTGCCGGGATTGGTCGGATGAATATTTACACGGTTCGGCAAGCCACTGAAGGTTTGGCCCGGTTTATGGACACACTGTCG GATGAAACTAAGGCCCGGGGGGTTGCGATTAGTTACGACTCCCGTTACATGAGTCAAGAGTTTGCTTATGAAAGTGCCGG GGTCTTGGGTGCTCATGGTATTAAGAGCTATGTTTTTGATCAGTTGCGGCCAACACCGGAATTAAGTTTTGCGGTGCGTC ATTTAAAGACCTATGCAGGCATTATGATCACTGCTAGTCATAACCCTAAGCAGTACAATGGGTATAAGATTTACGGTCCA GATGGCGGGCAGATGCCACCGGAAGAATCCGACAAAATCACCAAATATGCTCGTTCAGCAGCGGATCTTTTTGCTATCAA GTCTCTGAACATCCATGTGCTACGCGCCAAAAAGTTGATGCAACCGATTGGTGAAGATGTTGATGAAGCTTACTATGCTG AAGTGGCCACGGTCACCATCAACCATGATTTGATTAACAAAGTCGGCAAGAACATGTCGTTGGTTTATAGCCCACTGCAC GGGACTGGACGGATTCCAGCGCAAATGGTTTTGCGTAATGCTGGTTTCGAAAACTTCCGGTTGGTACCTGAGCAAAGTAT TGCTGATCCAGAATTTGCAACTACCCCATTCCCGAACCCAGAGTTCGCTCAAGTCTTTGATTTGCCAATTGCATTAGGCA AAAAAATCGGCGCTGATGTCTTAATCGCGACTGATCCCGATGCTGATCGGCTGGGCACAGCAGTTAAAGTCGGCGACCAT TATCAGTTGTTGACTGGTAACCAAATCGCTTCAGTCTTATTGCATTATATTCTGGAAGCGCGCAAGCAAGCTGGCACACT GCCGAAGAATGGCGCGGTTGTGAAGTCAATCGTGTCGACGGAATTGGCAACCGCCATTGCGAAGGATTATGGCGTGGACA TGATCAATGTGCTGACTGGTTTCAAGTTTATCGGTGATCAGATCAAGCATTTTCAAGCTACTGGCGAGCACGAATTTCTG TTTGGCTTTGAGGAAAGTTACGGCTATCTGATCAAGCCATTCGTGCGCGACAAGGATGCGATTCAGTCAACAGTGCTGCT GGCTGAAGTTGCCGCCTACTATCAGTCACAAGGCAAAACGCTTTGGGACGGCGTTCAGGAACTGTACAAGAAGTATGGTT ACTATGCTGAAAAGACCGTTGGTGTTGACTTTGAAGGGGTTGACGGTCAGAAGCAAATGGCTAACTTGATGACCAAGTTC CGCGAAGAACAGCCTGCTGATTTTGCGGGTGTCAAGATTACGAAGGTTGAAGACTTCCTGAGTCAGGAAGCTAAATCCGC TGATGGCACTGTTGAAAAACTGACCATGCCATCAAGCAACGTTCTGAAGTATATTTTGGCAGACGGTACTTGGATTGCTA TCCGGCCATCCGGCACCGAACCGAAAGTTAAGTTCTATGTCGGTACCAAAGCAGACACAGAAGCTAAGGCCCAAGAAAAA TTGGATGCCTTCGAAAAGGCGCTCAATGATTTTCGTGAAGAAGCTTAG
Upstream 100 bases:
>100_bases GAGCGCGTTTTCAACCCAGCACTCGTCCACTTATAGTATGATTGGGACGGGAAGGGTATTGCCCGAAATTATTAATTATA GACAGATGGGAGCTGATCAC
Downstream 100 bases:
>100_bases TTTGTTTTAAACGAATCAATGTGTGAATCCTGACGATTAAGCAGGTGAAGCAAGATAGCGGCGAACGCCTTGTCCCAAAT TTGGGACAAGGCGTTCGCCG
Product: phosphomannomutase
Products: NA
Alternate protein names: PGM; Alpha-phosphoglucomutase; Glucose phosphomutase [H]
Number of amino acids: Translated: 575; Mature: 574
Protein sequence:
>575_residues MSYRDTYQQWVDEPTLDPELKADLKNMADDETTKEQAFAAPMAFGTAGMRGVLGAGIGRMNIYTVRQATEGLARFMDTLS DETKARGVAISYDSRYMSQEFAYESAGVLGAHGIKSYVFDQLRPTPELSFAVRHLKTYAGIMITASHNPKQYNGYKIYGP DGGQMPPEESDKITKYARSAADLFAIKSLNIHVLRAKKLMQPIGEDVDEAYYAEVATVTINHDLINKVGKNMSLVYSPLH GTGRIPAQMVLRNAGFENFRLVPEQSIADPEFATTPFPNPEFAQVFDLPIALGKKIGADVLIATDPDADRLGTAVKVGDH YQLLTGNQIASVLLHYILEARKQAGTLPKNGAVVKSIVSTELATAIAKDYGVDMINVLTGFKFIGDQIKHFQATGEHEFL FGFEESYGYLIKPFVRDKDAIQSTVLLAEVAAYYQSQGKTLWDGVQELYKKYGYYAEKTVGVDFEGVDGQKQMANLMTKF REEQPADFAGVKITKVEDFLSQEAKSADGTVEKLTMPSSNVLKYILADGTWIAIRPSGTEPKVKFYVGTKADTEAKAQEK LDAFEKALNDFREEA
Sequences:
>Translated_575_residues MSYRDTYQQWVDEPTLDPELKADLKNMADDETTKEQAFAAPMAFGTAGMRGVLGAGIGRMNIYTVRQATEGLARFMDTLS DETKARGVAISYDSRYMSQEFAYESAGVLGAHGIKSYVFDQLRPTPELSFAVRHLKTYAGIMITASHNPKQYNGYKIYGP DGGQMPPEESDKITKYARSAADLFAIKSLNIHVLRAKKLMQPIGEDVDEAYYAEVATVTINHDLINKVGKNMSLVYSPLH GTGRIPAQMVLRNAGFENFRLVPEQSIADPEFATTPFPNPEFAQVFDLPIALGKKIGADVLIATDPDADRLGTAVKVGDH YQLLTGNQIASVLLHYILEARKQAGTLPKNGAVVKSIVSTELATAIAKDYGVDMINVLTGFKFIGDQIKHFQATGEHEFL FGFEESYGYLIKPFVRDKDAIQSTVLLAEVAAYYQSQGKTLWDGVQELYKKYGYYAEKTVGVDFEGVDGQKQMANLMTKF REEQPADFAGVKITKVEDFLSQEAKSADGTVEKLTMPSSNVLKYILADGTWIAIRPSGTEPKVKFYVGTKADTEAKAQEK LDAFEKALNDFREEA >Mature_574_residues SYRDTYQQWVDEPTLDPELKADLKNMADDETTKEQAFAAPMAFGTAGMRGVLGAGIGRMNIYTVRQATEGLARFMDTLSD ETKARGVAISYDSRYMSQEFAYESAGVLGAHGIKSYVFDQLRPTPELSFAVRHLKTYAGIMITASHNPKQYNGYKIYGPD GGQMPPEESDKITKYARSAADLFAIKSLNIHVLRAKKLMQPIGEDVDEAYYAEVATVTINHDLINKVGKNMSLVYSPLHG TGRIPAQMVLRNAGFENFRLVPEQSIADPEFATTPFPNPEFAQVFDLPIALGKKIGADVLIATDPDADRLGTAVKVGDHY QLLTGNQIASVLLHYILEARKQAGTLPKNGAVVKSIVSTELATAIAKDYGVDMINVLTGFKFIGDQIKHFQATGEHEFLF GFEESYGYLIKPFVRDKDAIQSTVLLAEVAAYYQSQGKTLWDGVQELYKKYGYYAEKTVGVDFEGVDGQKQMANLMTKFR EEQPADFAGVKITKVEDFLSQEAKSADGTVEKLTMPSSNVLKYILADGTWIAIRPSGTEPKVKFYVGTKADTEAKAQEKL DAFEKALNDFREEA
Specific function: Catalyzes the interconversion between glucose-6- phosphate and alpha-glucose-1-phosphate. This is the first step in the biosynthesis of diglucosyl-diacylglycerol (Glc2-DAG), i.e. the predominant glycolipid found in B.subtilis membrane, which is also used
COG id: COG1109
COG function: function code G; Phosphomannomutase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphohexose mutase family [H]
Homologues:
Organism=Homo sapiens, GI63055049, Length=552, Percent_Identity=31.7028985507246, Blast_Score=266, Evalue=5e-71, Organism=Homo sapiens, GI31377548, Length=550, Percent_Identity=31.8181818181818, Blast_Score=261, Evalue=9e-70, Organism=Escherichia coli, GI1786904, Length=598, Percent_Identity=25.0836120401338, Blast_Score=90, Evalue=3e-19, Organism=Caenorhabditis elegans, GI71993870, Length=582, Percent_Identity=30.7560137457045, Blast_Score=227, Evalue=1e-59, Organism=Caenorhabditis elegans, GI71993878, Length=316, Percent_Identity=34.1772151898734, Blast_Score=149, Evalue=3e-36, Organism=Saccharomyces cerevisiae, GI6323934, Length=563, Percent_Identity=30.550621669627, Blast_Score=203, Evalue=8e-53, Organism=Drosophila melanogaster, GI20129809, Length=550, Percent_Identity=29.0909090909091, Blast_Score=233, Evalue=4e-61, Organism=Drosophila melanogaster, GI24651977, Length=437, Percent_Identity=31.350114416476, Blast_Score=217, Evalue=2e-56, Organism=Drosophila melanogaster, GI24653722, Length=549, Percent_Identity=25.3187613843352, Blast_Score=178, Evalue=1e-44,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005844 - InterPro: IPR016055 - InterPro: IPR005845 - InterPro: IPR005846 - InterPro: IPR005843 - InterPro: IPR016066 - InterPro: IPR005841 [H]
Pfam domain/function: PF02878 PGM_PMM_I; PF02879 PGM_PMM_II; PF02880 PGM_PMM_III; PF00408 PGM_PMM_IV [H]
EC number: =5.4.2.2 [H]
Molecular weight: Translated: 63567; Mature: 63436
Theoretical pI: Translated: 5.22; Mature: 5.22
Prosite motif: PS00710 PGM_PMM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYRDTYQQWVDEPTLDPELKADLKNMADDETTKEQAFAAPMAFGTAGMRGVLGAGIGRM CCCHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC NIYTVRQATEGLARFMDTLSDETKARGVAISYDSRYMSQEFAYESAGVLGAHGIKSYVFD EEEEHHHHHHHHHHHHHHHCCHHHHCCEEEEECHHHHHHHHHHHHCCCCCHHHHHHHHHH QLRPTPELSFAVRHLKTYAGIMITASHNPKQYNGYKIYGPDGGQMPPEESDKITKYARSA HCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHH ADLFAIKSLNIHVLRAKKLMQPIGEDVDEAYYAEVATVTINHDLINKVGKNMSLVYSPLH HHHHHEECCCEEEEHHHHHHHHHCCCHHHHHHHEEEEEEECHHHHHHCCCCCEEEEECCC GTGRIPAQMVLRNAGFENFRLVPEQSIADPEFATTPFPNPEFAQVFDLPIALGKKIGADV CCCCCHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE LIATDPDADRLGTAVKVGDHYQLLTGNQIASVLLHYILEARKQAGTLPKNGAVVKSIVST EEEECCCHHHHCCEEEECCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH ELATAIAKDYGVDMINVLTGFKFIGDQIKHFQATGEHEFLFGFEESYGYLIKPFVRDKDA HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEHHHCCHHH IQSTVLLAEVAAYYQSQGKTLWDGVQELYKKYGYYAEKTVGVDFEGVDGQKQMANLMTKF HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHH REEQPADFAGVKITKVEDFLSQEAKSADGTVEKLTMPSSNVLKYILADGTWIAIRPSGTE HHCCCCCCCCEEEEHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHCCCCEEEEEECCCCC PKVKFYVGTKADTEAKAQEKLDAFEKALNDFREEA CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SYRDTYQQWVDEPTLDPELKADLKNMADDETTKEQAFAAPMAFGTAGMRGVLGAGIGRM CCHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC NIYTVRQATEGLARFMDTLSDETKARGVAISYDSRYMSQEFAYESAGVLGAHGIKSYVFD EEEEHHHHHHHHHHHHHHHCCHHHHCCEEEEECHHHHHHHHHHHHCCCCCHHHHHHHHHH QLRPTPELSFAVRHLKTYAGIMITASHNPKQYNGYKIYGPDGGQMPPEESDKITKYARSA HCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHH ADLFAIKSLNIHVLRAKKLMQPIGEDVDEAYYAEVATVTINHDLINKVGKNMSLVYSPLH HHHHHEECCCEEEEHHHHHHHHHCCCHHHHHHHEEEEEEECHHHHHHCCCCCEEEEECCC GTGRIPAQMVLRNAGFENFRLVPEQSIADPEFATTPFPNPEFAQVFDLPIALGKKIGADV CCCCCHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE LIATDPDADRLGTAVKVGDHYQLLTGNQIASVLLHYILEARKQAGTLPKNGAVVKSIVST EEEECCCHHHHCCEEEECCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH ELATAIAKDYGVDMINVLTGFKFIGDQIKHFQATGEHEFLFGFEESYGYLIKPFVRDKDA HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEHHHCCHHH IQSTVLLAEVAAYYQSQGKTLWDGVQELYKKYGYYAEKTVGVDFEGVDGQKQMANLMTKF HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHH REEQPADFAGVKITKVEDFLSQEAKSADGTVEKLTMPSSNVLKYILADGTWIAIRPSGTE HHCCCCCCCCEEEEHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHCCCCEEEEEECCCCC PKVKFYVGTKADTEAKAQEKLDAFEKALNDFREEA CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377; 2127799 [H]