| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
Click here to switch to the map view.
The map label for this gene is ytgP [H]
Identifier: 116494394
GI number: 116494394
Start: 861754
End: 863397
Strand: Direct
Name: ytgP [H]
Synonym: LSEI_0885
Alternate gene names: 116494394
Gene position: 861754-863397 (Clockwise)
Preceding gene: 116494393
Following gene: 116494395
Centisome position: 29.76
GC content: 46.78
Gene sequence:
>1644_bases ATGGAGAATTCGCTGGGCAGCGGTAATCAACCGCAACGTTCAGATAAGGAAAAAATGATCCGCGGCTCGGCGTGGATGAC TGCCGGCAGTGTTTTTTCGCGGATTTTAGGGGCCATTTATGTCATTCCATGGCGTATTTGGCTTGGAGCAGCGTTTCTAA CTGCCAACGCTTTGTTTACAAAAGGTTATCAAATTTACAGTCTTTTTCTGATTATTTCGACTGCTGGTGTTCCTGGTGCT GTTTCCAAACAGGTTGCCCGGTACAATGCTATGGGCGAATATAAAACCGGGATGCGTCTTTTTTACCACGGCACTTTTGC CATGGTGCTGATGGGGATTGTTTCGTGTGGTGCCATGTGGCTGCTGTCGCCGCTTTTAGCAGCGGGTGACGCGCGCATGA TACCGGTTTTTCGGTCACTGGCATGGCCGTTGCTGCTAATTCCGTCGCTTAGTTTGATTCGCGGGTTTTTCCAAGGTTAT AACGAGATGGCGCCGAGTGCCATCAGTCAGTTTATTGAACAAGTGGCGCGAATTCTTTATATGTTAGTGATGACTTACGC GATTATGGTGGCGGGTAACCACAGCTATCTGAGTGCGGTCATTCACTCCACCTTCGCCGCGTTCATCGGGGCCGTTTTCG GACTTGGACTGTTAGTTGTTTATTTCCTCCGGCAAAAACCACGGTTGGATGCGTTGGTTGCCCAAAGTGCTAATTCCCTG CAGATCAGTGTCAATGAGATTCTTTTAGATGTGGCACGGCAGGCGATTCCATTTATCATCATGGATTCAACGATTAATAT TTACTACATCGTTGACCAGTACACATTTAATCCAATGATGAAGGCTTTTTATCTCGTTAGCGAAGATCAGCTTGACCGTT TTTATGCGCTGTTTGCCGGAAACGCTAATAAACTGATTATGATCGTTGTTAGTCTGGCAGTTGCTATGGCCATTACCGTA GTACCATTATTGGCAGGTGCGAAAACGCGCGGTGATGTTGAGGGATTGGCCCGGCAAATCACGAATACACTGCAGTTGTT TTTTATCGTCATGATACCTTCGGCGTTGGGGATGGTGGCAGTCGCGCGCCCACTGTATGTTTTGTTCTATCGGGATATGG ACTGGTTGGGCATTCGCTTGTTGCAGATTTCATCACTTTTAGCGATTATGCTGGGCTTGTTTACGGTTTTGGCAGCAATT CTTCAGGGATTGTTCAATAACCGTCTTGCTATTCAAGAGATGCTGATTGGCTTGGCAGTTAAAGTGATTGTACAGTGGCC AATGATTTTCTTCTTCAATGTTTACGGTCCGGTTTTGTCCACAATGTTAGGCATGACGGTCTCGAGTCTCCTAATGCTCT ATTCAACGAATCGGATGTACAATATTCATGTACGCCAAACCATTCGCCGCGGCGTCGGTATTCTGGCCTTTTCCCTGATC ATGTGCGCCGTTTGTTACCTGATTGTGAATGCATCAACCTTGGTGATCAATCCGCGGAGTCAGTTCGGGGCAGCGTTCGT CTTGCTGATTGCAGTTGGGGTGGGCGTTTTGATTTACGTTTATTTGATTTTGAAAACGCGTTTGGCTGATTTAATCATTG GTGAGCGAATTAGTCGACTTCGCGATATTTTACACATTCGGTGA
Upstream 100 bases:
>100_bases AAGTTTTCTTTTGATTCCCGAAAGAAGCCCGGGAAAGATTGCAAGTCGCGCTGGGATTGCCTAAAATATAAAGGATTATG CAACACGACAGGAGTTTATC
Downstream 100 bases:
>100_bases GCTTATGCGATTAGATAAATATTTGAGTCATTTACAATTTGGTAGTCGAAAAGAAGTTAAGGCACTTATTCGCGACAAGC GGGTACGTGTGGCCGGTGAT
Product: polysaccharide transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 547; Mature: 547
Protein sequence:
>547_residues MENSLGSGNQPQRSDKEKMIRGSAWMTAGSVFSRILGAIYVIPWRIWLGAAFLTANALFTKGYQIYSLFLIISTAGVPGA VSKQVARYNAMGEYKTGMRLFYHGTFAMVLMGIVSCGAMWLLSPLLAAGDARMIPVFRSLAWPLLLIPSLSLIRGFFQGY NEMAPSAISQFIEQVARILYMLVMTYAIMVAGNHSYLSAVIHSTFAAFIGAVFGLGLLVVYFLRQKPRLDALVAQSANSL QISVNEILLDVARQAIPFIIMDSTINIYYIVDQYTFNPMMKAFYLVSEDQLDRFYALFAGNANKLIMIVVSLAVAMAITV VPLLAGAKTRGDVEGLARQITNTLQLFFIVMIPSALGMVAVARPLYVLFYRDMDWLGIRLLQISSLLAIMLGLFTVLAAI LQGLFNNRLAIQEMLIGLAVKVIVQWPMIFFFNVYGPVLSTMLGMTVSSLLMLYSTNRMYNIHVRQTIRRGVGILAFSLI MCAVCYLIVNASTLVINPRSQFGAAFVLLIAVGVGVLIYVYLILKTRLADLIIGERISRLRDILHIR
Sequences:
>Translated_547_residues MENSLGSGNQPQRSDKEKMIRGSAWMTAGSVFSRILGAIYVIPWRIWLGAAFLTANALFTKGYQIYSLFLIISTAGVPGA VSKQVARYNAMGEYKTGMRLFYHGTFAMVLMGIVSCGAMWLLSPLLAAGDARMIPVFRSLAWPLLLIPSLSLIRGFFQGY NEMAPSAISQFIEQVARILYMLVMTYAIMVAGNHSYLSAVIHSTFAAFIGAVFGLGLLVVYFLRQKPRLDALVAQSANSL QISVNEILLDVARQAIPFIIMDSTINIYYIVDQYTFNPMMKAFYLVSEDQLDRFYALFAGNANKLIMIVVSLAVAMAITV VPLLAGAKTRGDVEGLARQITNTLQLFFIVMIPSALGMVAVARPLYVLFYRDMDWLGIRLLQISSLLAIMLGLFTVLAAI LQGLFNNRLAIQEMLIGLAVKVIVQWPMIFFFNVYGPVLSTMLGMTVSSLLMLYSTNRMYNIHVRQTIRRGVGILAFSLI MCAVCYLIVNASTLVINPRSQFGAAFVLLIAVGVGVLIYVYLILKTRLADLIIGERISRLRDILHIR >Mature_547_residues MENSLGSGNQPQRSDKEKMIRGSAWMTAGSVFSRILGAIYVIPWRIWLGAAFLTANALFTKGYQIYSLFLIISTAGVPGA VSKQVARYNAMGEYKTGMRLFYHGTFAMVLMGIVSCGAMWLLSPLLAAGDARMIPVFRSLAWPLLLIPSLSLIRGFFQGY NEMAPSAISQFIEQVARILYMLVMTYAIMVAGNHSYLSAVIHSTFAAFIGAVFGLGLLVVYFLRQKPRLDALVAQSANSL QISVNEILLDVARQAIPFIIMDSTINIYYIVDQYTFNPMMKAFYLVSEDQLDRFYALFAGNANKLIMIVVSLAVAMAITV VPLLAGAKTRGDVEGLARQITNTLQLFFIVMIPSALGMVAVARPLYVLFYRDMDWLGIRLLQISSLLAIMLGLFTVLAAI LQGLFNNRLAIQEMLIGLAVKVIVQWPMIFFFNVYGPVLSTMLGMTVSSLLMLYSTNRMYNIHVRQTIRRGVGILAFSLI MCAVCYLIVNASTLVINPRSQFGAAFVLLIAVGVGVLIYVYLILKTRLADLIIGERISRLRDILHIR
Specific function: May play a role in cell division, although it is not essential for growth [H]
COG id: COG2244
COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential). Note=Localizes at the septum [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the polysaccharide synthase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002797 [H]
Pfam domain/function: PF01943 Polysacc_synt [H]
EC number: NA
Molecular weight: Translated: 60624; Mature: 60624
Theoretical pI: Translated: 10.11; Mature: 10.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 5.3 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 5.3 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MENSLGSGNQPQRSDKEKMIRGSAWMTAGSVFSRILGAIYVIPWRIWLGAAFLTANALFT CCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KGYQIYSLFLIISTAGVPGAVSKQVARYNAMGEYKTGMRLFYHGTFAMVLMGIVSCGAMW CCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHCCHHEEHHHHHHHHHHHHHHHHHH LLSPLLAAGDARMIPVFRSLAWPLLLIPSLSLIRGFFQGYNEMAPSAISQFIEQVARILY HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHH MLVMTYAIMVAGNHSYLSAVIHSTFAAFIGAVFGLGLLVVYFLRQKPRLDALVAQSANSL HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCE QISVNEILLDVARQAIPFIIMDSTINIYYIVDQYTFNPMMKAFYLVSEDQLDRFYALFAG EEEHHHHHHHHHHHHCCEEEEECCEEEEEEEECCCCCHHHHHHHHHCHHHHHHHHHHHCC NANKLIMIVVSLAVAMAITVVPLLAGAKTRGDVEGLARQITNTLQLFFIVMIPSALGMVA CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VARPLYVLFYRDMDWLGIRLLQISSLLAIMLGLFTVLAAILQGLFNNRLAIQEMLIGLAV HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH KVIVQWPMIFFFNVYGPVLSTMLGMTVSSLLMLYSTNRMYNIHVRQTIRRGVGILAFSLI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHH MCAVCYLIVNASTLVINPRSQFGAAFVLLIAVGVGVLIYVYLILKTRLADLIIGERISRL HHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RDILHIR HHHHCCC >Mature Secondary Structure MENSLGSGNQPQRSDKEKMIRGSAWMTAGSVFSRILGAIYVIPWRIWLGAAFLTANALFT CCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KGYQIYSLFLIISTAGVPGAVSKQVARYNAMGEYKTGMRLFYHGTFAMVLMGIVSCGAMW CCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHCCHHEEHHHHHHHHHHHHHHHHHH LLSPLLAAGDARMIPVFRSLAWPLLLIPSLSLIRGFFQGYNEMAPSAISQFIEQVARILY HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHH MLVMTYAIMVAGNHSYLSAVIHSTFAAFIGAVFGLGLLVVYFLRQKPRLDALVAQSANSL HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCE QISVNEILLDVARQAIPFIIMDSTINIYYIVDQYTFNPMMKAFYLVSEDQLDRFYALFAG EEEHHHHHHHHHHHHCCEEEEECCEEEEEEEECCCCCHHHHHHHHHCHHHHHHHHHHHCC NANKLIMIVVSLAVAMAITVVPLLAGAKTRGDVEGLARQITNTLQLFFIVMIPSALGMVA CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VARPLYVLFYRDMDWLGIRLLQISSLLAIMLGLFTVLAAILQGLFNNRLAIQEMLIGLAV HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH KVIVQWPMIFFFNVYGPVLSTMLGMTVSSLLMLYSTNRMYNIHVRQTIRRGVGILAFSLI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHH MCAVCYLIVNASTLVINPRSQFGAAFVLLIAVGVGVLIYVYLILKTRLADLIIGERISRL HHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RDILHIR HHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9387221; 9384377 [H]