| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
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The map label for this gene is leuS
Identifier: 116494392
GI number: 116494392
Start: 859077
End: 861488
Strand: Direct
Name: leuS
Synonym: LSEI_0883
Alternate gene names: 116494392
Gene position: 859077-861488 (Clockwise)
Preceding gene: 116494390
Following gene: 116494393
Centisome position: 29.67
GC content: 47.18
Gene sequence:
>2412_bases ATGGCATACGATCATCATGAGATCGATAAGAAGTGGCAGCGTTATTGGGCCGAGCATAACGAATTTAATACCACAACCGA TCCTAAGAAGCCGAATTATTATGCGTTGGACATGTTTCCTTATCCGTCAGGCCAAGGCCTGCATGTTGGGCATCCGGAAG GGTATACGGCAACTGATATTGTTGCACGCATGAAACGGATGCAAGGGTTCAATGTTCTTCATCCTATGGGCTGGGATGCA TTCGGCTTGCCAGCTGAGCAATATGCCTTGAACACGGGTCACAATCCGAAGACCTTTACCAAACAAAATATTGAGACCTT TAAGCGTCAAATCAACAGCCTTGGCTTTTCATATGACTGGAATCGTGAAATCAACACAACGGATCCGAATTACTACAAGT GGACCCAGTGGATTTTTGAACAACTTTATAAACATGGTCTGGCATATGAAGCTGAGGTACCGGTTAACTGGAGTCCGGAT CTAGGGACGGTTGTTGCAAACGAAGAAGTGATTGATGGCAAAACGGAGCGTGGCGGGTTCCCAGTTGTTCGGAAGCCGAT GCGTCAGTGGATGCTGAAAATCACAGCCTATGCTGAAAAGCTGTTGACGGATCTGGACGATCTTGACTGGCCGGAATCAA TTAAGCAGATGCAACGCAACTGGATTGGCAAATCAACTGGGGCACAGATCACCTTCCGGGTAACTGACAGTCATGAGCCG TTTGATGTCTTTACCACTCGTCCAGATACGCTGTTTGGTGCAACGTATGTCGTGATGGCACCAGAACATGAATTAGTTCA GAAAATTACCACCCCGGCACAACAGGCCGTCGTTGATGCGTACATTGACGAAGCCGCCCATAAGTCAGATCTTGATCGTA CCGCTTTAGATAAGGAAAAGACTGGTGTTTGGACCGGGGCCTACGCGACTAATCCGGTTAACGGCGAAAAACTGCCGATT TGGATTTCAGACTACGTTTTAGCCTCTTATGGGACTGGCGCAATCATGTCCGTGCCTGCGCATGATGATCGTGATTACGC TTTTGCCAAAAAGTTTGGTATTGAAATCAAGCCTGTTATTGAAGGCGGCAATGTCGATGAAGCAGCTTATACTGGCGATG GCGTGCACATCAACTCCGGGTTCCTTGATGGTTTGAATGAACACGACGCGATTGATCGAATGATCAAATGGCTTGAAGAT AAAGGTATCGGCAGTGCCAAAATCAATTACAAACTGCGTGATTGGGTCTTTTCACGCCAGCGTTATTGGGGTGAACCGAT TCCTGTCATTCACTGGGAAGATGGCGAAACCACGTTGGTGCCAGAAGACGAACTGCCCCTCACATTACCTGAAGAGGCTG ATATCAAGCCAAGCGGTACTGGCGAGAGTCCACTGGCAAATCTGACTGACTGGGTTAATGTGGTCGACAAGAACGGGCGG AAAGGTAAGCGTGAGACCAATACAATGCCGCAATGGGCAGGGTCTTCATGGTACTTCCTGCGGTTTGTTGATCCTCACAA CAAGGAAGCTCTTGCGGATTACGACAAACTTAAGGCATGGATGCCAGTTGATCTGTACATTGGAGGGGCTGAACATGCTG TGCTGCACCTGCTGTATGCCCGTTTCTGGAATCTGTTCCTTTATGACATCGGGGCGATCCCGAACAAAGAACCGTTCCAA CGGCTATTTAACCAAGGGATGATTCTGGGCGATAATCATGAAAAGATGAGTAAGTCCAAGGGCAATGTGGTTAATCCAGA TGATGTGGTTGATGAGTATGGTGCCGATACCTTGCGGCTGTACGAAATGTTTATGGGGCCGCTGGATGCTGGTATTGCTT GGTCAACAAAAGGGTTAGCTGGTGCCCGCAAGTTCTTGGATCGCGTCTGGAGTGCTTTCATTGATGATGAAGGCAAACTG CGTGATCGGATTACGACGATCAATGACGGTCGACTTGATAAGGTTTACAATGAGACGGTCAAGAAGGTTACCGAGGACTA CGATGCTTTGCATTTCAACACGGCAATTTCACAGATGATGGTCTTCATCAACTCAGCGCGTAAAGATGATGACCTGCCAC TAGAATATGTTGAAGGATTCGTGAAAATGCTTGCGCCGATTGCCCCGCATCTAATGGAAGAAATTTGGTCACGGCTAGGT CACGATCATAGTCTGACTTATGCGCCATGGCCAAGTTATGATGAAAGCAAAATCAAAACCGACACTTACGATATGATGAT CCAAGTCAATGGCAAGCTGCGCGGTTCGATTACGGCGGATGTCAACGAATCAGATGATGAGATCAAACAAGCGGCTTTGG CAAATGATAATGTTCAGAAATTTACGGCGGGCAAAGACATTAAGAAAATTATTGTCGTACCGCGAAAAATCGTGAATATT GTCGCAAAATAA
Upstream 100 bases:
>100_bases TTTGAGCGCTGTGAAAGCAGAACTTAGGTGGTACCGCGGCTGAGCCGTCCTAATGTAGATAGGGCGGCTTTTTGTTTGAA ATTAAGTGGGAGGTAACAAA
Downstream 100 bases:
>100_bases CCGCACTGGCTTCACCAATTAACTGAAAGAAAAAATGGTCAACGAATGGTTCCTGAAGGAAGCGGGCGTTGACCATTTTT TTAGCGATTCAGCTGCATGA
Product: leucyl-tRNA synthetase
Products: NA
Alternate protein names: Leucine--tRNA ligase; LeuRS
Number of amino acids: Translated: 803; Mature: 802
Protein sequence:
>803_residues MAYDHHEIDKKWQRYWAEHNEFNTTTDPKKPNYYALDMFPYPSGQGLHVGHPEGYTATDIVARMKRMQGFNVLHPMGWDA FGLPAEQYALNTGHNPKTFTKQNIETFKRQINSLGFSYDWNREINTTDPNYYKWTQWIFEQLYKHGLAYEAEVPVNWSPD LGTVVANEEVIDGKTERGGFPVVRKPMRQWMLKITAYAEKLLTDLDDLDWPESIKQMQRNWIGKSTGAQITFRVTDSHEP FDVFTTRPDTLFGATYVVMAPEHELVQKITTPAQQAVVDAYIDEAAHKSDLDRTALDKEKTGVWTGAYATNPVNGEKLPI WISDYVLASYGTGAIMSVPAHDDRDYAFAKKFGIEIKPVIEGGNVDEAAYTGDGVHINSGFLDGLNEHDAIDRMIKWLED KGIGSAKINYKLRDWVFSRQRYWGEPIPVIHWEDGETTLVPEDELPLTLPEEADIKPSGTGESPLANLTDWVNVVDKNGR KGKRETNTMPQWAGSSWYFLRFVDPHNKEALADYDKLKAWMPVDLYIGGAEHAVLHLLYARFWNLFLYDIGAIPNKEPFQ RLFNQGMILGDNHEKMSKSKGNVVNPDDVVDEYGADTLRLYEMFMGPLDAGIAWSTKGLAGARKFLDRVWSAFIDDEGKL RDRITTINDGRLDKVYNETVKKVTEDYDALHFNTAISQMMVFINSARKDDDLPLEYVEGFVKMLAPIAPHLMEEIWSRLG HDHSLTYAPWPSYDESKIKTDTYDMMIQVNGKLRGSITADVNESDDEIKQAALANDNVQKFTAGKDIKKIIVVPRKIVNI VAK
Sequences:
>Translated_803_residues MAYDHHEIDKKWQRYWAEHNEFNTTTDPKKPNYYALDMFPYPSGQGLHVGHPEGYTATDIVARMKRMQGFNVLHPMGWDA FGLPAEQYALNTGHNPKTFTKQNIETFKRQINSLGFSYDWNREINTTDPNYYKWTQWIFEQLYKHGLAYEAEVPVNWSPD LGTVVANEEVIDGKTERGGFPVVRKPMRQWMLKITAYAEKLLTDLDDLDWPESIKQMQRNWIGKSTGAQITFRVTDSHEP FDVFTTRPDTLFGATYVVMAPEHELVQKITTPAQQAVVDAYIDEAAHKSDLDRTALDKEKTGVWTGAYATNPVNGEKLPI WISDYVLASYGTGAIMSVPAHDDRDYAFAKKFGIEIKPVIEGGNVDEAAYTGDGVHINSGFLDGLNEHDAIDRMIKWLED KGIGSAKINYKLRDWVFSRQRYWGEPIPVIHWEDGETTLVPEDELPLTLPEEADIKPSGTGESPLANLTDWVNVVDKNGR KGKRETNTMPQWAGSSWYFLRFVDPHNKEALADYDKLKAWMPVDLYIGGAEHAVLHLLYARFWNLFLYDIGAIPNKEPFQ RLFNQGMILGDNHEKMSKSKGNVVNPDDVVDEYGADTLRLYEMFMGPLDAGIAWSTKGLAGARKFLDRVWSAFIDDEGKL RDRITTINDGRLDKVYNETVKKVTEDYDALHFNTAISQMMVFINSARKDDDLPLEYVEGFVKMLAPIAPHLMEEIWSRLG HDHSLTYAPWPSYDESKIKTDTYDMMIQVNGKLRGSITADVNESDDEIKQAALANDNVQKFTAGKDIKKIIVVPRKIVNI VAK >Mature_802_residues AYDHHEIDKKWQRYWAEHNEFNTTTDPKKPNYYALDMFPYPSGQGLHVGHPEGYTATDIVARMKRMQGFNVLHPMGWDAF GLPAEQYALNTGHNPKTFTKQNIETFKRQINSLGFSYDWNREINTTDPNYYKWTQWIFEQLYKHGLAYEAEVPVNWSPDL GTVVANEEVIDGKTERGGFPVVRKPMRQWMLKITAYAEKLLTDLDDLDWPESIKQMQRNWIGKSTGAQITFRVTDSHEPF DVFTTRPDTLFGATYVVMAPEHELVQKITTPAQQAVVDAYIDEAAHKSDLDRTALDKEKTGVWTGAYATNPVNGEKLPIW ISDYVLASYGTGAIMSVPAHDDRDYAFAKKFGIEIKPVIEGGNVDEAAYTGDGVHINSGFLDGLNEHDAIDRMIKWLEDK GIGSAKINYKLRDWVFSRQRYWGEPIPVIHWEDGETTLVPEDELPLTLPEEADIKPSGTGESPLANLTDWVNVVDKNGRK GKRETNTMPQWAGSSWYFLRFVDPHNKEALADYDKLKAWMPVDLYIGGAEHAVLHLLYARFWNLFLYDIGAIPNKEPFQR LFNQGMILGDNHEKMSKSKGNVVNPDDVVDEYGADTLRLYEMFMGPLDAGIAWSTKGLAGARKFLDRVWSAFIDDEGKLR DRITTINDGRLDKVYNETVKKVTEDYDALHFNTAISQMMVFINSARKDDDLPLEYVEGFVKMLAPIAPHLMEEIWSRLGH DHSLTYAPWPSYDESKIKTDTYDMMIQVNGKLRGSITADVNESDDEIKQAALANDNVQKFTAGKDIKKIIVVPRKIVNIV AK
Specific function: Unknown
COG id: COG0495
COG function: function code J; Leucyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family
Homologues:
Organism=Homo sapiens, GI7661872, Length=878, Percent_Identity=32.9157175398633, Blast_Score=459, Evalue=1e-129, Organism=Homo sapiens, GI108773810, Length=297, Percent_Identity=26.2626262626263, Blast_Score=73, Evalue=1e-12, Organism=Escherichia coli, GI1786861, Length=861, Percent_Identity=40.8826945412311, Blast_Score=647, Evalue=0.0, Organism=Escherichia coli, GI1790708, Length=390, Percent_Identity=23.8461538461538, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI71997510, Length=790, Percent_Identity=30.5063291139241, Blast_Score=326, Evalue=3e-89, Organism=Caenorhabditis elegans, GI71997517, Length=790, Percent_Identity=30.5063291139241, Blast_Score=325, Evalue=4e-89, Organism=Caenorhabditis elegans, GI212645227, Length=315, Percent_Identity=33.015873015873, Blast_Score=141, Evalue=1e-33, Organism=Caenorhabditis elegans, GI17554638, Length=274, Percent_Identity=25.5474452554745, Blast_Score=75, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17541896, Length=393, Percent_Identity=23.6641221374046, Blast_Score=71, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6323414, Length=850, Percent_Identity=34.4705882352941, Blast_Score=460, Evalue=1e-130, Organism=Saccharomyces cerevisiae, GI6321531, Length=905, Percent_Identity=22.3204419889503, Blast_Score=110, Evalue=1e-24, Organism=Saccharomyces cerevisiae, GI6325097, Length=225, Percent_Identity=28.4444444444444, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI21355409, Length=775, Percent_Identity=34.1935483870968, Blast_Score=399, Evalue=1e-111, Organism=Drosophila melanogaster, GI281366294, Length=797, Percent_Identity=23.7139272271016, Blast_Score=104, Evalue=2e-22, Organism=Drosophila melanogaster, GI28574733, Length=267, Percent_Identity=27.3408239700375, Blast_Score=78, Evalue=3e-14,
Paralogues:
None
Copy number: 800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): SYL_LACC3 (Q03AT8)
Other databases:
- EMBL: CP000423 - RefSeq: YP_806126.1 - ProteinModelPortal: Q03AT8 - SMR: Q03AT8 - STRING: Q03AT8 - GeneID: 4421698 - GenomeReviews: CP000423_GR - KEGG: lca:LSEI_0883 - eggNOG: COG0495 - HOGENOM: HBG693845 - OMA: ERGNFPV - ProtClustDB: PRK00390 - BioCyc: LCAS321967:LSEI_0883-MONOMER - GO: GO:0005737 - HAMAP: MF_00049_B - InterPro: IPR001412 - InterPro: IPR002300 - InterPro: IPR002302 - InterPro: IPR014729 - InterPro: IPR009080 - InterPro: IPR013155 - InterPro: IPR009008 - Gene3D: G3DSA:3.40.50.620 - PANTHER: PTHR11946:SF7 - PRINTS: PR00985 - TIGRFAMs: TIGR00396
Pfam domain/function: PF08264 Anticodon_1; PF00133 tRNA-synt_1; SSF47323 tRNAsyn_1a_bind; SSF50677 ValRS_IleRS_edit
EC number: =6.1.1.4
Molecular weight: Translated: 91528; Mature: 91397
Theoretical pI: Translated: 5.09; Mature: 5.09
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: BINDING 578-578
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAYDHHEIDKKWQRYWAEHNEFNTTTDPKKPNYYALDMFPYPSGQGLHVGHPEGYTATDI CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCEECCCCCCCCHHHH VARMKRMQGFNVLHPMGWDAFGLPAEQYALNTGHNPKTFTKQNIETFKRQINSLGFSYDW HHHHHHHCCCCCCCCCCCCCCCCCHHHHEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEC NREINTTDPNYYKWTQWIFEQLYKHGLAYEAEVPVNWSPDLGTVVANEEVIDGKTERGGF CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEECCHHCCCCCCCCCC PVVRKPMRQWMLKITAYAEKLLTDLDDLDWPESIKQMQRNWIGKSTGAQITFRVTDSHEP HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCC FDVFTTRPDTLFGATYVVMAPEHELVQKITTPAQQAVVDAYIDEAAHKSDLDRTALDKEK CEEEECCCCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHCHHH TGVWTGAYATNPVNGEKLPIWISDYVLASYGTGAIMSVPAHDDRDYAFAKKFGIEIKPVI CCEEECCCCCCCCCCCEEEEEEECHHHHHCCCCCEEECCCCCCCCHHHHHHHCCEEEEEE EGGNVDEAAYTGDGVHINSGFLDGLNEHDAIDRMIKWLEDKGIGSAKINYKLRDWVFSRQ ECCCCCCCEECCCCEEECCCHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHH RYWGEPIPVIHWEDGETTLVPEDELPLTLPEEADIKPSGTGESPLANLTDWVNVVDKNGR HHCCCCCCEEEECCCCEEECCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC KGKRETNTMPQWAGSSWYFLRFVDPHNKEALADYDKLKAWMPVDLYIGGAEHAVLHLLYA CCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH RFWNLFLYDIGAIPNKEPFQRLFNQGMILGDNHEKMSKSKGNVVNPDDVVDEYGADTLRL HHHHHHHHHHCCCCCCHHHHHHHHCCCEECCCHHHHHHCCCCCCCHHHHHHHHCCHHHHH YEMFMGPLDAGIAWSTKGLAGARKFLDRVWSAFIDDEGKLRDRITTINDGRLDKVYNETV HHHHHCHHCCCCEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHEEECCCCCHHHHHHHHH KKVTEDYDALHFNTAISQMMVFINSARKDDDLPLEYVEGFVKMLAPIAPHLMEEIWSRLG HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC HDHSLTYAPWPSYDESKIKTDTYDMMIQVNGKLRGSITADVNESDDEIKQAALANDNVQK CCCCEEECCCCCCCCCCCCCCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHHCCCCHHH FTAGKDIKKIIVVPRKIVNIVAK HHCCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure AYDHHEIDKKWQRYWAEHNEFNTTTDPKKPNYYALDMFPYPSGQGLHVGHPEGYTATDI CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCEECCCCCCCCHHHH VARMKRMQGFNVLHPMGWDAFGLPAEQYALNTGHNPKTFTKQNIETFKRQINSLGFSYDW HHHHHHHCCCCCCCCCCCCCCCCCHHHHEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEC NREINTTDPNYYKWTQWIFEQLYKHGLAYEAEVPVNWSPDLGTVVANEEVIDGKTERGGF CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEECCHHCCCCCCCCCC PVVRKPMRQWMLKITAYAEKLLTDLDDLDWPESIKQMQRNWIGKSTGAQITFRVTDSHEP HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCC FDVFTTRPDTLFGATYVVMAPEHELVQKITTPAQQAVVDAYIDEAAHKSDLDRTALDKEK CEEEECCCCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHCHHH TGVWTGAYATNPVNGEKLPIWISDYVLASYGTGAIMSVPAHDDRDYAFAKKFGIEIKPVI CCEEECCCCCCCCCCCEEEEEEECHHHHHCCCCCEEECCCCCCCCHHHHHHHCCEEEEEE EGGNVDEAAYTGDGVHINSGFLDGLNEHDAIDRMIKWLEDKGIGSAKINYKLRDWVFSRQ ECCCCCCCEECCCCEEECCCHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHH RYWGEPIPVIHWEDGETTLVPEDELPLTLPEEADIKPSGTGESPLANLTDWVNVVDKNGR HHCCCCCCEEEECCCCEEECCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC KGKRETNTMPQWAGSSWYFLRFVDPHNKEALADYDKLKAWMPVDLYIGGAEHAVLHLLYA CCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH RFWNLFLYDIGAIPNKEPFQRLFNQGMILGDNHEKMSKSKGNVVNPDDVVDEYGADTLRL HHHHHHHHHHCCCCCCHHHHHHHHCCCEECCCHHHHHHCCCCCCCHHHHHHHHCCHHHHH YEMFMGPLDAGIAWSTKGLAGARKFLDRVWSAFIDDEGKLRDRITTINDGRLDKVYNETV HHHHHCHHCCCCEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHEEECCCCCHHHHHHHHH KKVTEDYDALHFNTAISQMMVFINSARKDDDLPLEYVEGFVKMLAPIAPHLMEEIWSRLG HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC HDHSLTYAPWPSYDESKIKTDTYDMMIQVNGKLRGSITADVNESDDEIKQAALANDNVQK CCCCEEECCCCCCCCCCCCCCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHHCCCCHHH FTAGKDIKKIIVVPRKIVNIVAK HHCCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA