| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
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The map label for this gene is 116494390
Identifier: 116494390
GI number: 116494390
Start: 857113
End: 857838
Strand: Direct
Name: 116494390
Synonym: LSEI_0881
Alternate gene names: NA
Gene position: 857113-857838 (Clockwise)
Preceding gene: 116494389
Following gene: 116494392
Centisome position: 29.6
GC content: 47.25
Gene sequence:
>726_bases ATGATTCTATGGTTTTTGGGCCTGACAGTGATCGGCCTTTATCTCAGCTTTATTATGATGAAACGCTCCAGTTTGCGTAG CACGTTAATTGCGGTCTTCGGGATTGGTGTGGTGGGTAGTCTATTGCTGATTACGTTGAATGATAATGCGCATTTTGGCA TGGTCAAACGAACAACAACTGATGAGCAGACCATCTACACCGCCTCACCGAATGCACAACTGCCAATGTTGCTAAAACAA AACATTGGCACGGATGGCAAGCATGTTGTCTACATTTATAAGACCGATCCGAAGAAAAAAGCGGTTCATACCAAGGCTGA TATTGTTGTAACTAATCGGGTGACAACGACAGCGAATGCCACAGCTTCGTTGACGAGCAAAACAACTCGGTGGCAATATC AAAACGGTTTTTATGGTGCGTTGTTCAATCATGAAGGGGCTGGTCAATTGGTTGCTCAGCACAATCAATTGGTCATCCCA ACAAGCTGGTCAGTGCTGACAACGGCTCAGGCCAAGCAGCTTGGTAAAAAGTTGGCCGCCTTGCAGCAACCAACTGCAGA ACAAAAAGCGTCACTGGCAGCCGCAGTCAAGGCTAAAGCTGCTGCGCTGGCCAAGGCTGATCCAAAACTAGCAGCAGATC CGACAGCTTTAGCGAAGCAGGCTAAGGCTGCGGTTGAACAAGCAATGATTCAGCAAGCTGTTCGTGAAGTGCAAGCACAA AAATAG
Upstream 100 bases:
>100_bases CAGCAGGGTTCAGTTTAATTGGCTGGATCTTGGCTTTCTTCTTGAATACCCACGCGATGTCGCAAGAAGTGACGATCAAA AGTGAAAAGAAGGTGAAGGC
Downstream 100 bases:
>100_bases TCTGATGCCGCCCATAACGTGGTACTAGGGCAAACATTTTTCGTAACATTATCTTGACGAATGGCTTTTGTCAGCCTTCT AAATTAAAAAAAGCAGTCCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 241; Mature: 241
Protein sequence:
>241_residues MILWFLGLTVIGLYLSFIMMKRSSLRSTLIAVFGIGVVGSLLLITLNDNAHFGMVKRTTTDEQTIYTASPNAQLPMLLKQ NIGTDGKHVVYIYKTDPKKKAVHTKADIVVTNRVTTTANATASLTSKTTRWQYQNGFYGALFNHEGAGQLVAQHNQLVIP TSWSVLTTAQAKQLGKKLAALQQPTAEQKASLAAAVKAKAAALAKADPKLAADPTALAKQAKAAVEQAMIQQAVREVQAQ K
Sequences:
>Translated_241_residues MILWFLGLTVIGLYLSFIMMKRSSLRSTLIAVFGIGVVGSLLLITLNDNAHFGMVKRTTTDEQTIYTASPNAQLPMLLKQ NIGTDGKHVVYIYKTDPKKKAVHTKADIVVTNRVTTTANATASLTSKTTRWQYQNGFYGALFNHEGAGQLVAQHNQLVIP TSWSVLTTAQAKQLGKKLAALQQPTAEQKASLAAAVKAKAAALAKADPKLAADPTALAKQAKAAVEQAMIQQAVREVQAQ K >Mature_241_residues MILWFLGLTVIGLYLSFIMMKRSSLRSTLIAVFGIGVVGSLLLITLNDNAHFGMVKRTTTDEQTIYTASPNAQLPMLLKQ NIGTDGKHVVYIYKTDPKKKAVHTKADIVVTNRVTTTANATASLTSKTTRWQYQNGFYGALFNHEGAGQLVAQHNQLVIP TSWSVLTTAQAKQLGKKLAALQQPTAEQKASLAAAVKAKAAALAKADPKLAADPTALAKQAKAAVEQAMIQQAVREVQAQ K
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25974; Mature: 25974
Theoretical pI: Translated: 10.69; Mature: 10.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILWFLGLTVIGLYLSFIMMKRSSLRSTLIAVFGIGVVGSLLLITLNDNAHFGMVKRTTT CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCEEEEEECCC DEQTIYTASPNAQLPMLLKQNIGTDGKHVVYIYKTDPKKKAVHTKADIVVTNRVTTTANA CCCEEEEECCCCCCCHHHHHCCCCCCCEEEEEEECCCCHHHHCCCEEEEEECCEEECCCC TASLTSKTTRWQYQNGFYGALFNHEGAGQLVAQHNQLVIPTSWSVLTTAQAKQLGKKLAA CCHHCCCCCEEEECCCEEEEEECCCCCCHHEECCCCEEEECCCHHHHHHHHHHHHHHHHH LQQPTAEQKASLAAAVKAKAAALAKADPKLAADPTALAKQAKAAVEQAMIQQAVREVQAQ HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC K C >Mature Secondary Structure MILWFLGLTVIGLYLSFIMMKRSSLRSTLIAVFGIGVVGSLLLITLNDNAHFGMVKRTTT CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCEEEEEECCC DEQTIYTASPNAQLPMLLKQNIGTDGKHVVYIYKTDPKKKAVHTKADIVVTNRVTTTANA CCCEEEEECCCCCCCHHHHHCCCCCCCEEEEEEECCCCHHHHCCCEEEEEECCEEECCCC TASLTSKTTRWQYQNGFYGALFNHEGAGQLVAQHNQLVIPTSWSVLTTAQAKQLGKKLAA CCHHCCCCCEEEECCCEEEEEECCCCCCHHEECCCCEEEECCCHHHHHHHHHHHHHHHHH LQQPTAEQKASLAAAVKAKAAALAKADPKLAADPTALAKQAKAAVEQAMIQQAVREVQAQ HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC K C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA