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The map label for this gene is yfnB [H]

Identifier: 116494355

GI number: 116494355

Start: 808511

End: 809194

Strand: Direct

Name: yfnB [H]

Synonym: LSEI_0811

Alternate gene names: 116494355

Gene position: 808511-809194 (Clockwise)

Preceding gene: 116494353

Following gene: 116494359

Centisome position: 27.93

GC content: 46.05

Gene sequence:

>684_bases
ATGTATCGGATAATTTTGTTTGATGTTGATGACACGTTACTGGATTTTAAAGCAGGTGAACTAAAAAGTCTGGCAAAGAT
GTTTGCCAGACTCAATTTGACTTACTCGCCGCGGATTGAGGCAAGTTATCTGAAAATTAATGCCAGTCTATGGCGTGACT
ACGAAGCGGGGCGCATCACGCGGCCAGAATTATTTGATGTGCGGTTTGCCAAACTCTTTCGCCATCATCACATTGAGGCT
GATCCGCATTTGGCAGAACGCACCTATCATCATTTTTTGGATCAAGAGGCCATTTTGCTGCCGCGAGTTCTGGACACCTT
GGATGCGTTGCAGGATTATCGGCTGTTTATTGTCAGCAACGGTATCGAGCCTGTGCAACGTGAACGCTTGGCATCGAGCG
GTCTGATTGATTACTTTGAAGATATTTTTGTTTCTGATAGCGTGGGCAGCCCGAAGCCGACCGTGGCCTTTTTTGACTAT
GTTGCCAAACGCATCCCGCGGTTTGACCGGCGTGAGACATTGATCATGGGTGACTCGCTGACCTCAGACATTCAAGGTGG
GATCAATGGCAAAATTGATTCGATTTGGTTTAATCCACATTTTCAGCCAAATCGCGATCACATCACACCGACTTATCAAC
TCAACGAATTTAGCGATTTGACGAAGCTATTGACGCTTAACTGA

Upstream 100 bases:

>100_bases
TGGCGAAGCCTAAGCGCTGACTTCGCAAACAGCTTGTCACGTCTCATCAGGTGTGTAAAACTGATAGCATGTAGCTTTAA
GACGAGAATAGGAGCTTAGT

Downstream 100 bases:

>100_bases
AGTGACTTAGACTGTTTCAACGAGTCGGATGGTGCCACTTGAGACCACCAATGTGCCAAGATCTGTTTTTAATAGTAAAG
CGCCGTTATCATCGAATCCG

Product: HAD superfamily hydrolase

Products: (R)-2-hydroxyacid; halide

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MYRIILFDVDDTLLDFKAGELKSLAKMFARLNLTYSPRIEASYLKINASLWRDYEAGRITRPELFDVRFAKLFRHHHIEA
DPHLAERTYHHFLDQEAILLPRVLDTLDALQDYRLFIVSNGIEPVQRERLASSGLIDYFEDIFVSDSVGSPKPTVAFFDY
VAKRIPRFDRRETLIMGDSLTSDIQGGINGKIDSIWFNPHFQPNRDHITPTYQLNEFSDLTKLLTLN

Sequences:

>Translated_227_residues
MYRIILFDVDDTLLDFKAGELKSLAKMFARLNLTYSPRIEASYLKINASLWRDYEAGRITRPELFDVRFAKLFRHHHIEA
DPHLAERTYHHFLDQEAILLPRVLDTLDALQDYRLFIVSNGIEPVQRERLASSGLIDYFEDIFVSDSVGSPKPTVAFFDY
VAKRIPRFDRRETLIMGDSLTSDIQGGINGKIDSIWFNPHFQPNRDHITPTYQLNEFSDLTKLLTLN
>Mature_227_residues
MYRIILFDVDDTLLDFKAGELKSLAKMFARLNLTYSPRIEASYLKINASLWRDYEAGRITRPELFDVRFAKLFRHHHIEA
DPHLAERTYHHFLDQEAILLPRVLDTLDALQDYRLFIVSNGIEPVQRERLASSGLIDYFEDIFVSDSVGSPKPTVAFFDY
VAKRIPRFDRRETLIMGDSLTSDIQGGINGKIDSIWFNPHFQPNRDHITPTYQLNEFSDLTKLLTLN

Specific function: Unknown

COG id: COG1011

COG function: function code R; Predicted hydrolase (HAD superfamily)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. YjjG family [H]

Homologues:

Organism=Escherichia coli, GI1790833, Length=222, Percent_Identity=31.0810810810811, Blast_Score=123, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006439
- InterPro:   IPR011951 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: 3.8.1.2

Molecular weight: Translated: 26424; Mature: 26424

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYRIILFDVDDTLLDFKAGELKSLAKMFARLNLTYSPRIEASYLKINASLWRDYEAGRIT
CEEEEEEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCCCCCCCCC
RPELFDVRFAKLFRHHHIEADPHLAERTYHHFLDQEAILLPRVLDTLDALQDYRLFIVSN
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCEEEEEEC
GIEPVQRERLASSGLIDYFEDIFVSDSVGSPKPTVAFFDYVAKRIPRFDRRETLIMGDSL
CCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH
TSDIQGGINGKIDSIWFNPHFQPNRDHITPTYQLNEFSDLTKLLTLN
HHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEECCHHHHHHHHHCCC
>Mature Secondary Structure
MYRIILFDVDDTLLDFKAGELKSLAKMFARLNLTYSPRIEASYLKINASLWRDYEAGRIT
CEEEEEEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCCCCCCCCC
RPELFDVRFAKLFRHHHIEADPHLAERTYHHFLDQEAILLPRVLDTLDALQDYRLFIVSN
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCEEEEEEC
GIEPVQRERLASSGLIDYFEDIFVSDSVGSPKPTVAFFDYVAKRIPRFDRRETLIMGDSL
CCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH
TSDIQGGINGKIDSIWFNPHFQPNRDHITPTYQLNEFSDLTKLLTLN
HHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEECCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: (S)-2-haloacid; H2O

Specific reaction: (S)-2-haloacid + H2O = (R)-2-hydroxyacid + halide

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9141694; 9384377 [H]