Click here to switch to the map view.

The map label for this gene is agaD [H]

Identifier: 116493967

GI number: 116493967

Start: 404549

End: 405400

Strand: Direct

Name: agaD [H]

Synonym: LSEI_0403

Alternate gene names: 116493967

Gene position: 404549-405400 (Clockwise)

Preceding gene: 116493966

Following gene: 116493968

Centisome position: 13.97

GC content: 45.89

Gene sequence:

>852_bases
ATGAGTGATGTACAGCAAACAACCAACCAGCCGAGTGCGACACAACCTAAGCTGACTAAAAAAGAACGACACAGTGCCAT
CCTTCGTTACATGGCCATGGGCGTCAACAATTTTAACTACGAAACGCAGCAGGGGCCATCCGTTGTTTGGGCATTTTCAA
AGGTTCTGCGGAAAATTTATCCCGATGATGATGAGTATGTCGCTGCTTTGGACAATCATTTTAAATACTTCAATACGACC
ACTGCAATGGCTGGCATGATCTTAGGGGCAACGCTGGCCATGGAAGAACGTGATGGCATTAAGTCCAAAGATGCGGTTCA
GGCGTTGAAGACATCGCTGATGGGCCCATTTGCCGGCGTTGGTGACACGATCATCTGGATTCTGTTACCGACGATCATGG
GTTCTATTGCCGGTTATATGGCCCTCCAAGGCAATCCACTAGGTGCAATTATCTGGATTCTCGTTGATATTTTGCTGTTC
TGGGTTCGAATTAAGCTGTTTGATATCGGTTATGATTCTGGGGTTAAGCTGGTTACGACCATGGCTAACCAATTGAGTGC
TTTCACAGAAGCTGCTTCCGTGATGGGGATTACCGTTGTCGGTACATTGATTGCAACGGTTGTTAAAGTTTACACACCAC
TACAATTCCAGTTTGGCAAAGTTAAGTTAGCGATGCAGACAGGTATTCTTGACAAAATCATGCCTGCCTTGCTGCCTGCC
TTGGTTGCCTGGATGGTTTACAAGTTGCTCGGTTCGAAAAAATGGACGCCTAATCGTGTCATTGTCCTGATTTTAGCCAT
TGCACTCGTAGGTTCCTTCTTTGGTATTCTCGGGATTGAACCAACAAAGTAA

Upstream 100 bases:

>100_bases
TACACCTATCAGAACCTGATCAGTGCTTCTAAGAAGAAGGAAGCGGCGACAGCTAATGGTGCTGATGCTTCAGATGATGA
TGACGAAGGAGACGATTACG

Downstream 100 bases:

>100_bases
TCATGATGAAAGATTGAGGGGTTGATATTTTGAATCAGAAGAATCAAGTCAGCGGGGATCATTATCGGTTTACCGTCATT
ACAAATAAGATGATCCGCAT

Product: phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID

Products: NA

Alternate protein names: EIID-Aga; PTS system N-acetylgalactosamine-specific EIID component [H]

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MSDVQQTTNQPSATQPKLTKKERHSAILRYMAMGVNNFNYETQQGPSVVWAFSKVLRKIYPDDDEYVAALDNHFKYFNTT
TAMAGMILGATLAMEERDGIKSKDAVQALKTSLMGPFAGVGDTIIWILLPTIMGSIAGYMALQGNPLGAIIWILVDILLF
WVRIKLFDIGYDSGVKLVTTMANQLSAFTEAASVMGITVVGTLIATVVKVYTPLQFQFGKVKLAMQTGILDKIMPALLPA
LVAWMVYKLLGSKKWTPNRVIVLILAIALVGSFFGILGIEPTK

Sequences:

>Translated_283_residues
MSDVQQTTNQPSATQPKLTKKERHSAILRYMAMGVNNFNYETQQGPSVVWAFSKVLRKIYPDDDEYVAALDNHFKYFNTT
TAMAGMILGATLAMEERDGIKSKDAVQALKTSLMGPFAGVGDTIIWILLPTIMGSIAGYMALQGNPLGAIIWILVDILLF
WVRIKLFDIGYDSGVKLVTTMANQLSAFTEAASVMGITVVGTLIATVVKVYTPLQFQFGKVKLAMQTGILDKIMPALLPA
LVAWMVYKLLGSKKWTPNRVIVLILAIALVGSFFGILGIEPTK
>Mature_282_residues
SDVQQTTNQPSATQPKLTKKERHSAILRYMAMGVNNFNYETQQGPSVVWAFSKVLRKIYPDDDEYVAALDNHFKYFNTTT
AMAGMILGATLAMEERDGIKSKDAVQALKTSLMGPFAGVGDTIIWILLPTIMGSIAGYMALQGNPLGAIIWILVDILLFW
VRIKLFDIGYDSGVKLVTTMANQLSAFTEAASVMGITVVGTLIATVVKVYTPLQFQFGKVKLAMQTGILDKIMPALLPAL
VAWMVYKLLGSKKWTPNRVIVLILAIALVGSFFGILGIEPTK

Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. This system i

COG id: COG3716

COG function: function code G; Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PTS EIID domain [H]

Homologues:

Organism=Escherichia coli, GI1789529, Length=243, Percent_Identity=34.5679012345679, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1788122, Length=290, Percent_Identity=32.4137931034483, Blast_Score=129, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004704
- InterPro:   IPR018405 [H]

Pfam domain/function: PF03613 EIID-AGA [H]

EC number: NA

Molecular weight: Translated: 31002; Mature: 30871

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: PS51108 PTS_EIID

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SDVQQTTNQPSATQPKLTKKERHSAILRYMAMGVNNFNYETQQGPSVVWAFSKVLRKIY
CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHC
PDDDEYVAALDNHFKYFNTTTAMAGMILGATLAMEERDGIKSKDAVQALKTSLMGPFAGV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCC
GDTIIWILLPTIMGSIAGYMALQGNPLGAIIWILVDILLFWVRIKLFDIGYDSGVKLVTT
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
MANQLSAFTEAASVMGITVVGTLIATVVKVYTPLQFQFGKVKLAMQTGILDKIMPALLPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHEEHHHHHHHHHHHHHHHHHH
LVAWMVYKLLGSKKWTPNRVIVLILAIALVGSFFGILGIEPTK
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10931310; 9278503; 8932697 [H]