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The map label for this gene is agaC [H]

Identifier: 116493966

GI number: 116493966

Start: 403747

End: 404556

Strand: Direct

Name: agaC [H]

Synonym: LSEI_0402

Alternate gene names: 116493966

Gene position: 403747-404556 (Clockwise)

Preceding gene: 116493965

Following gene: 116493967

Centisome position: 13.95

GC content: 45.8

Gene sequence:

>810_bases
ATGCCACATATTTTGCAAGATATCCTGATCATTTTCTTGGCATCATACGCAACGCTTGATAATCAAGGTATCACGATTAT
GAACTACTGGCCGGTGACGGTCGGACTTTTTGCCGGATTGATTATGGGTGATTTACCGACAGCCATGACCATTGCCGGGA
CTTTCCAATTAATGAGTTTAGGGGTTGCCGGCCTAGGTGGCGCATCTGTGCCTGACTACGGCTTAGCTACCATCGTTGGG
ATCTATTTGTCAGCACGGACAGGCGCAGGATTGGGAGCCGCGGTTGCCGTTGGACTGCCAGTCGGGCTGTTGACGATTCA
ACTGGATGTTTTAATTAAAATCGTCAACAACTTCATTGCTCACAAGGCACAAGCATATGCGCATGCCAAAGAATTTAATA
AAATGCGGATGATTAACTGGCTTGGACCGTTGTTCTTCGCCCTCAAGAACTTTATTCCCATGATCTTGATTGTCACAGTT
GGACCTTCTGCCATCAGTGCCTTGCTCAAGATCATTCCTAAGTGGCTTACAAATGGTTTGACAATTGCAGGTAGCATGTT
GCCAGTTGTTGGTATTGGGATGCTGATGCATTACATGCCTTTGAAGAAGTATATCTGGGTTCTTATGATCGGTTTCGTTA
TGTCAGCTTATCTGAAAGTGCCGATTCTTGGCGTTGCGATCATTGGTTTGGCACTAGCAATTTACACCTATCAGAACCTG
ATCAGTGCTTCTAAGAAGAAGGAAGCGGCGACAGCTAATGGTGCTGATGCTTCAGATGATGATGACGAAGGAGACGATTA
CGATGAGTGA

Upstream 100 bases:

>100_bases
ACCCGCTGATTCACCCGAACCATTTGATAAGGCCATTGCAGGCAAAGACATTAAATAATCAGCGAGTTCTTGGCTGAAGA
ACGCGCGAGGAGGAAACATC

Downstream 100 bases:

>100_bases
TGTACAGCAAACAACCAACCAGCCGAGTGCGACACAACCTAAGCTGACTAAAAAAGAACGACACAGTGCCATCCTTCGTT
ACATGGCCATGGGCGTCAAC

Product: phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC

Products: NA

Alternate protein names: EIIC-Aga; PTS system N-acetylgalactosamine-specific EIIC component 1 [H]

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MPHILQDILIIFLASYATLDNQGITIMNYWPVTVGLFAGLIMGDLPTAMTIAGTFQLMSLGVAGLGGASVPDYGLATIVG
IYLSARTGAGLGAAVAVGLPVGLLTIQLDVLIKIVNNFIAHKAQAYAHAKEFNKMRMINWLGPLFFALKNFIPMILIVTV
GPSAISALLKIIPKWLTNGLTIAGSMLPVVGIGMLMHYMPLKKYIWVLMIGFVMSAYLKVPILGVAIIGLALAIYTYQNL
ISASKKKEAATANGADASDDDDEGDDYDE

Sequences:

>Translated_269_residues
MPHILQDILIIFLASYATLDNQGITIMNYWPVTVGLFAGLIMGDLPTAMTIAGTFQLMSLGVAGLGGASVPDYGLATIVG
IYLSARTGAGLGAAVAVGLPVGLLTIQLDVLIKIVNNFIAHKAQAYAHAKEFNKMRMINWLGPLFFALKNFIPMILIVTV
GPSAISALLKIIPKWLTNGLTIAGSMLPVVGIGMLMHYMPLKKYIWVLMIGFVMSAYLKVPILGVAIIGLALAIYTYQNL
ISASKKKEAATANGADASDDDDEGDDYDE
>Mature_268_residues
PHILQDILIIFLASYATLDNQGITIMNYWPVTVGLFAGLIMGDLPTAMTIAGTFQLMSLGVAGLGGASVPDYGLATIVGI
YLSARTGAGLGAAVAVGLPVGLLTIQLDVLIKIVNNFIAHKAQAYAHAKEFNKMRMINWLGPLFFALKNFIPMILIVTVG
PSAISALLKIIPKWLTNGLTIAGSMLPVVGIGMLMHYMPLKKYIWVLMIGFVMSAYLKVPILGVAIIGLALAIYTYQNLI
SASKKKEAATANGADASDDDDEGDDYDE

Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. This system i

COG id: COG3715

COG function: function code G; Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PTS EIIC type-4 domain [H]

Homologues:

Organism=Escherichia coli, GI1789528, Length=238, Percent_Identity=27.7310924369748, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1788121, Length=265, Percent_Identity=27.5471698113208, Blast_Score=78, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004700
- InterPro:   IPR018404 [H]

Pfam domain/function: PF03609 EII-Sor [H]

EC number: NA

Molecular weight: Translated: 28663; Mature: 28531

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS51106 PTS_EIIC_TYPE_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PHILQDILIIFLASYATLDNQGITIMNYWPVTVGLFAGLIMGDLPTAMTIAGTFQLMSL
CHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
GVAGLGGASVPDYGLATIVGIYLSARTGAGLGAAVAVGLPVGLLTIQLDVLIKIVNNFIA
HHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HKAQAYAHAKEFNKMRMINWLGPLFFALKNFIPMILIVTVGPSAISALLKIIPKWLTNGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHCCE
TIAGSMLPVVGIGMLMHYMPLKKYIWVLMIGFVMSAYLKVPILGVAIIGLALAIYTYQNL
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISASKKKEAATANGADASDDDDEGDDYDE
HHHHHHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 8932697 [H]