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The map label for this gene is yrhO [H]

Identifier: 116493898

GI number: 116493898

Start: 330733

End: 331563

Strand: Direct

Name: yrhO [H]

Synonym: LSEI_0330

Alternate gene names: 116493898

Gene position: 330733-331563 (Clockwise)

Preceding gene: 116493897

Following gene: 116493899

Centisome position: 11.42

GC content: 41.76

Gene sequence:

>831_bases
GTGGATCCTGAACTAACAGACTTGTTCAAGCAGTTTCATTTTTCTAAGTACGAGAGTCAGTGTTACGTCACGATGCTTCA
ATTACCAGCGAGTACCGGGTACGAAATCGCAAAACGATCAGGTATTCCGCGGTCAAAAATCTATGAAGTTCTGAATCGTA
TGACGGAACGTGGCATTGTTTTGGCAAGCAAGAGTGATCCAACGTATTACAACGTTATCTCTGCTGATGAATTAGTGACA
ACACTCGGACACCAAGCTTCTGCCCAGTTGGCACGAATAAAAACACGATTAGCGAATGTGGAGACTAAAAAAGATGGTGA
ACTGATTTATTCAATTCCCAACAGAAAACAGACACAGGACAAACTGTCAGACTTATTAGCGCATTGCGAGAAGTCGTTTT
ACTTACAAATCTGGAAAGAAGATATCAGTTCGGACATTTTAGGAGAACTAACACGACTTTCTAAGATTCTTGATCACTTC
GTCGTCATTCTGTTTAGTAATCGTCATGACTATCACATGCCTTTTACACGAGTATATCCGCACTGGTTTGAACGTGATAA
ACTACTGGACTTCGGCGGTCGTTGGGTTAATGCCGTCATTGATGGTGCTGAGGTTCTTTATGGCACTTTCGGGGATGAAG
GTGATGATGTCATCTATACGAGAAATCATTCGTTTGTTTTCATTGCGCAAGAATATGTGATTCACGATGCGTATGATCTG
AGAACGCTGGAAACTTTAGATGCAGCAGCAAAGAAGGCGTTTGGTCCGGATCTCGAAGGCGTCAGAGATATTTATATGAT
GGATAGAAAAGGGAAGAATGCTCATGATTAA

Upstream 100 bases:

>100_bases
ATTTAAAAATAATCTTGACTAGTGAATAAATTCACTTATAGTAGTTACTGTTGGTAGCTACCATTTTGATACTTTCATTT
CTGAGGGGAGATGATGAATT

Downstream 100 bases:

>100_bases
GATCTTATTGGGATTAATCGTACTAATTAATTTAGGCTTTGTATTTTACTTTATCCGTGACTTGCTCCGGCATCGTTCAG
ATGTTATGTCGGAACCTGCA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MDPELTDLFKQFHFSKYESQCYVTMLQLPASTGYEIAKRSGIPRSKIYEVLNRMTERGIVLASKSDPTYYNVISADELVT
TLGHQASAQLARIKTRLANVETKKDGELIYSIPNRKQTQDKLSDLLAHCEKSFYLQIWKEDISSDILGELTRLSKILDHF
VVILFSNRHDYHMPFTRVYPHWFERDKLLDFGGRWVNAVIDGAEVLYGTFGDEGDDVIYTRNHSFVFIAQEYVIHDAYDL
RTLETLDAAAKKAFGPDLEGVRDIYMMDRKGKNAHD

Sequences:

>Translated_276_residues
MDPELTDLFKQFHFSKYESQCYVTMLQLPASTGYEIAKRSGIPRSKIYEVLNRMTERGIVLASKSDPTYYNVISADELVT
TLGHQASAQLARIKTRLANVETKKDGELIYSIPNRKQTQDKLSDLLAHCEKSFYLQIWKEDISSDILGELTRLSKILDHF
VVILFSNRHDYHMPFTRVYPHWFERDKLLDFGGRWVNAVIDGAEVLYGTFGDEGDDVIYTRNHSFVFIAQEYVIHDAYDL
RTLETLDAAAKKAFGPDLEGVRDIYMMDRKGKNAHD
>Mature_276_residues
MDPELTDLFKQFHFSKYESQCYVTMLQLPASTGYEIAKRSGIPRSKIYEVLNRMTERGIVLASKSDPTYYNVISADELVT
TLGHQASAQLARIKTRLANVETKKDGELIYSIPNRKQTQDKLSDLLAHCEKSFYLQIWKEDISSDILGELTRLSKILDHF
VVILFSNRHDYHMPFTRVYPHWFERDKLLDFGGRWVNAVIDGAEVLYGTFGDEGDDVIYTRNHSFVFIAQEYVIHDAYDL
RTLETLDAAAKKAFGPDLEGVRDIYMMDRKGKNAHD

Specific function: Unknown

COG id: COG1378

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021586
- InterPro:   IPR002831
- InterPro:   IPR011991 [H]

Pfam domain/function: PF11495 Regulator_TrmB; PF01978 TrmB [H]

EC number: NA

Molecular weight: Translated: 31820; Mature: 31820

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPELTDLFKQFHFSKYESQCYVTMLQLPASTGYEIAKRSGIPRSKIYEVLNRMTERGIV
CCCHHHHHHHHHHHHHHCCHHEEEEEECCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCEE
LASKSDPTYYNVISADELVTTLGHQASAQLARIKTRLANVETKKDGELIYSIPNRKQTQD
EEECCCCCEEEEECHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHH
KLSDLLAHCEKSFYLQIWKEDISSDILGELTRLSKILDHFVVILFSNRHDYHMPFTRVYP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCHHHHCC
HWFERDKLLDFGGRWVNAVIDGAEVLYGTFGDEGDDVIYTRNHSFVFIAQEYVIHDAYDL
CHHCCCHHHHCCCHHHHHHHCCHHHEEECCCCCCCCEEEECCCCEEEEEHHHHHHCHHHH
RTLETLDAAAKKAFGPDLEGVRDIYMMDRKGKNAHD
HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MDPELTDLFKQFHFSKYESQCYVTMLQLPASTGYEIAKRSGIPRSKIYEVLNRMTERGIV
CCCHHHHHHHHHHHHHHCCHHEEEEEECCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCEE
LASKSDPTYYNVISADELVTTLGHQASAQLARIKTRLANVETKKDGELIYSIPNRKQTQD
EEECCCCCEEEEECHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHH
KLSDLLAHCEKSFYLQIWKEDISSDILGELTRLSKILDHFVVILFSNRHDYHMPFTRVYP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCHHHHCC
HWFERDKLLDFGGRWVNAVIDGAEVLYGTFGDEGDDVIYTRNHSFVFIAQEYVIHDAYDL
CHHCCCHHHHCCCHHHHHHHCCHHHEEECCCCCCCCEEEECCCCEEEEEHHHHHHCHHHH
RTLETLDAAAKKAFGPDLEGVRDIYMMDRKGKNAHD
HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377 [H]