| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is purL [H]
Identifier: 116493200
GI number: 116493200
Start: 1436239
End: 1438443
Strand: Reverse
Name: purL [H]
Synonym: PEPE_1462
Alternate gene names: 116493200
Gene position: 1438443-1436239 (Counterclockwise)
Preceding gene: 116493201
Following gene: 116493199
Centisome position: 78.5
GC content: 41.18
Gene sequence:
>2205_bases ATGAAGGAATTAACACCTACCGAAATTCGAGATCAAAAATTGTATTTGCAATGGGGGATAAGCGAAGACGAATATCAGAA AATCAATGATGCTTTAGGGCGCCTACCTAATTTTACAGAAACGGGTTTGTTCGCTGCGATGTGGAGTGAGCATTGTGCAT ATAAAAATTCTAAACCCCTCTTAAAACAATTTCCAACAACGGGTTCACAGATTTTACAAGGGCCCGGGGAAGGAGCTGGA ATTGTTGATATTGGTAACAATCAAGCGGTGGTCTTTAAAGCAGAAAGTCATAATCACCCTACGGCAGTCGAGCCTTATCA AGGAGCGGCTACTGGAGTTGGAGGAATTATTCGTGATATTTTTTCCATGGGAGCGCGTCCGATTGCATTAATGGACAGTT TACATTTCGGTGAATTGAATGATGCCCATACTAAGTATCTTGTTGACCAGACAATAGCTGGAATCGGCGATTACGGTAAT TGTATGGGAATACCTACAGTAGGAGGGGAAACGACCTTCGATACAATTTATCAAAACAATCCAGTCATGAACGCAATGTG TGTGGGGTTATTGGATATCAACGACCAACAAAAAGGAGCGGCTGCTGGTGTAGGTAATGCCATTTACTACGTGGGGGCTA AAACGGGACGTGATGGAATTCAAGGAGCCATTTTTGCTTCAACCAAATTTAGTGACGAACAAGAAACGCAACGTTCAGCC GTCCAGGTTGGAGATCCTTTTGCTGAAAAACAACTAATGGAAGCGTGTCTAGAACTGATTCATAACCATTCCGAATATCT AGTGGGAATTCAAGATATGGGAGCAGCGGGGTTGATTTCATCATCTGCAGAAATGGCTGCTAAAGCTGGATATGGAATGC ATTTGAATTTGGATTTAGTTCCACAACGTGAAGAAGAAATGATCCCTTATGAATTAATGCTATCTGAATCTCAGGAACGG ATGCTGCTCTGTGTCAAACAAGGATTTGAACCCGCAGTTGAAGCACTATTTGCTAAATACGAGAGCGAAGCAGTAAAAAT TGGTGAAGTTACTGCAGGTGACCGCTATCAATTAACCTTTAAGGGCGTTCAAGTTGCTGATGTACCAGTGCATGCTTTGG TGGATGAAGCCCCAGTTTACCATCAACCAAGTCAGAAACCTCAGCATATCAGTGAAACTAAAAAGCAACAGTATCAACCT AAAATTGAAAATTTAACTAAAACCTTCCAAGCGATGTTGCAACAACCCACAATTGCGCATAAAGGTGCTATTTTTGAACG GTATGACTCTCAAGTTCAAACTAATACAATTTCAACGACACAAAGTGATGCGGCAGTGGTTCGTATTCGAGGAACTCAGA AAACTTTGGCGATGACGACCGATGCTAATCCGCGTTATTTGTATTTAGATCCCTATTATGGTGGACAAATCGCGGTCAGT GAGGCCGCTCGAAACATAGTTGCTACAGGTGGAATACCATTGGCAATTACCGACTGTTTGAACTTTGGTAGCCCCGAAGA CCCAGAAAGTTTCTATGAATTAGAACAGGCTACTAAAGGGATGACGGAGGCTTGTAAATTATTTGATACACCCGTCATTT CAGGTAATGTCTCACTTTATAATGAATCCAACCAACAACCCATTTATCCAACACCAATGGTTGGAATGGTTGGTTTAATT GAAAATCCAGCTTGGATAACAACCATAGATTTTAAAAAATCTGGTGATTTAATTTATATTTTGGGAGAAACAACAGCAGA ACTTAATGGTAGTGAATTACAAAAAATGCAACTCGGACATGTTGAAGGTCCATTATTTAATTTCGATTTACGCTATGAAC AGGAGCAACAAGAATTGTTGACTCAGTTAATTCACGCGGAACTTTTGAATAGTGCGCATGACTTAGCCGAAGGTGGCTTA GCCGTTGGTTTAGCTGAATGCGTGTTCGCTAGTGAGTTAGGATGTGACGTCAAGACTAATTTAACAGCTACAGAACTATT TGCCGAAAATCAGGCCCGCTTTATTGTGACGATTGCTCCAGATAAACAAAAGATTTTTGAAGCACAAGTGGCAAACAGAG CAACTTTAATCGGCCAAGTTGGCGGTAAGCGGATCAAAATTGCAACGATGGATGATGTAATTGATGTTGATTTGAAAAAT ACTAAGGAGAGTTGGAAGGGAGCCCTAGCATGGCAGCTGAATTAA
Upstream 100 bases:
>100_bases CTAGTGAAGCCGTCCTAGGTGGCGAAGATGGCAAAATGCTGTTCCAAAGTTTAATTGAAAGCATGACGCAAAATGTTTAA TTAAAGGAGTTTTCGCAATG
Downstream 100 bases:
>100_bases AGGGTCTAAACGAAGAATGCGGTGTTTTTGGTATTTGGAATGATTCAGAAGCTGCCCAACGGACCTACTTCGGACTTCAC AGCTTACAACATCGAGGCCA
Product: phosphoribosylformylglycinamidine synthase domain-containing protein
Products: NA
Alternate protein names: Phosphoribosylformylglycinamidine synthase II; FGAM synthase II [H]
Number of amino acids: Translated: 734; Mature: 734
Protein sequence:
>734_residues MKELTPTEIRDQKLYLQWGISEDEYQKINDALGRLPNFTETGLFAAMWSEHCAYKNSKPLLKQFPTTGSQILQGPGEGAG IVDIGNNQAVVFKAESHNHPTAVEPYQGAATGVGGIIRDIFSMGARPIALMDSLHFGELNDAHTKYLVDQTIAGIGDYGN CMGIPTVGGETTFDTIYQNNPVMNAMCVGLLDINDQQKGAAAGVGNAIYYVGAKTGRDGIQGAIFASTKFSDEQETQRSA VQVGDPFAEKQLMEACLELIHNHSEYLVGIQDMGAAGLISSSAEMAAKAGYGMHLNLDLVPQREEEMIPYELMLSESQER MLLCVKQGFEPAVEALFAKYESEAVKIGEVTAGDRYQLTFKGVQVADVPVHALVDEAPVYHQPSQKPQHISETKKQQYQP KIENLTKTFQAMLQQPTIAHKGAIFERYDSQVQTNTISTTQSDAAVVRIRGTQKTLAMTTDANPRYLYLDPYYGGQIAVS EAARNIVATGGIPLAITDCLNFGSPEDPESFYELEQATKGMTEACKLFDTPVISGNVSLYNESNQQPIYPTPMVGMVGLI ENPAWITTIDFKKSGDLIYILGETTAELNGSELQKMQLGHVEGPLFNFDLRYEQEQQELLTQLIHAELLNSAHDLAEGGL AVGLAECVFASELGCDVKTNLTATELFAENQARFIVTIAPDKQKIFEAQVANRATLIGQVGGKRIKIATMDDVIDVDLKN TKESWKGALAWQLN
Sequences:
>Translated_734_residues MKELTPTEIRDQKLYLQWGISEDEYQKINDALGRLPNFTETGLFAAMWSEHCAYKNSKPLLKQFPTTGSQILQGPGEGAG IVDIGNNQAVVFKAESHNHPTAVEPYQGAATGVGGIIRDIFSMGARPIALMDSLHFGELNDAHTKYLVDQTIAGIGDYGN CMGIPTVGGETTFDTIYQNNPVMNAMCVGLLDINDQQKGAAAGVGNAIYYVGAKTGRDGIQGAIFASTKFSDEQETQRSA VQVGDPFAEKQLMEACLELIHNHSEYLVGIQDMGAAGLISSSAEMAAKAGYGMHLNLDLVPQREEEMIPYELMLSESQER MLLCVKQGFEPAVEALFAKYESEAVKIGEVTAGDRYQLTFKGVQVADVPVHALVDEAPVYHQPSQKPQHISETKKQQYQP KIENLTKTFQAMLQQPTIAHKGAIFERYDSQVQTNTISTTQSDAAVVRIRGTQKTLAMTTDANPRYLYLDPYYGGQIAVS EAARNIVATGGIPLAITDCLNFGSPEDPESFYELEQATKGMTEACKLFDTPVISGNVSLYNESNQQPIYPTPMVGMVGLI ENPAWITTIDFKKSGDLIYILGETTAELNGSELQKMQLGHVEGPLFNFDLRYEQEQQELLTQLIHAELLNSAHDLAEGGL AVGLAECVFASELGCDVKTNLTATELFAENQARFIVTIAPDKQKIFEAQVANRATLIGQVGGKRIKIATMDDVIDVDLKN TKESWKGALAWQLN >Mature_734_residues MKELTPTEIRDQKLYLQWGISEDEYQKINDALGRLPNFTETGLFAAMWSEHCAYKNSKPLLKQFPTTGSQILQGPGEGAG IVDIGNNQAVVFKAESHNHPTAVEPYQGAATGVGGIIRDIFSMGARPIALMDSLHFGELNDAHTKYLVDQTIAGIGDYGN CMGIPTVGGETTFDTIYQNNPVMNAMCVGLLDINDQQKGAAAGVGNAIYYVGAKTGRDGIQGAIFASTKFSDEQETQRSA VQVGDPFAEKQLMEACLELIHNHSEYLVGIQDMGAAGLISSSAEMAAKAGYGMHLNLDLVPQREEEMIPYELMLSESQER MLLCVKQGFEPAVEALFAKYESEAVKIGEVTAGDRYQLTFKGVQVADVPVHALVDEAPVYHQPSQKPQHISETKKQQYQP KIENLTKTFQAMLQQPTIAHKGAIFERYDSQVQTNTISTTQSDAAVVRIRGTQKTLAMTTDANPRYLYLDPYYGGQIAVS EAARNIVATGGIPLAITDCLNFGSPEDPESFYELEQATKGMTEACKLFDTPVISGNVSLYNESNQQPIYPTPMVGMVGLI ENPAWITTIDFKKSGDLIYILGETTAELNGSELQKMQLGHVEGPLFNFDLRYEQEQQELLTQLIHAELLNSAHDLAEGGL AVGLAECVFASELGCDVKTNLTATELFAENQARFIVTIAPDKQKIFEAQVANRATLIGQVGGKRIKIATMDDVIDVDLKN TKESWKGALAWQLN
Specific function: Unknown
COG id: COG0046
COG function: function code F; Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the FGAMS family [H]
Homologues:
Organism=Escherichia coli, GI48994899, Length=832, Percent_Identity=24.1586538461538, Blast_Score=126, Evalue=5e-30, Organism=Caenorhabditis elegans, GI17553022, Length=443, Percent_Identity=25.2821670428894, Blast_Score=93, Evalue=4e-19, Organism=Drosophila melanogaster, GI24582111, Length=226, Percent_Identity=29.2035398230088, Blast_Score=66, Evalue=7e-11, Organism=Drosophila melanogaster, GI24582109, Length=226, Percent_Identity=29.2035398230088, Blast_Score=66, Evalue=7e-11, Organism=Drosophila melanogaster, GI17137292, Length=226, Percent_Identity=29.2035398230088, Blast_Score=66, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000728 - InterPro: IPR010918 - InterPro: IPR010074 - InterPro: IPR016188 [H]
Pfam domain/function: PF00586 AIRS; PF02769 AIRS_C [H]
EC number: =6.3.5.3 [H]
Molecular weight: Translated: 80241; Mature: 80241
Theoretical pI: Translated: 4.51; Mature: 4.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKELTPTEIRDQKLYLQWGISEDEYQKINDALGRLPNFTETGLFAAMWSEHCAYKNSKPL CCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCH LKQFPTTGSQILQGPGEGAGIVDIGNNQAVVFKAESHNHPTAVEPYQGAATGVGGIIRDI HHHCCCCCHHHHCCCCCCCCEEEECCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH FSMGARPIALMDSLHFGELNDAHTKYLVDQTIAGIGDYGNCMGIPTVGGETTFDTIYQNN HHCCCCCEEHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCHHHHCCCC PVMNAMCVGLLDINDQQKGAAAGVGNAIYYVGAKTGRDGIQGAIFASTKFSDEQETQRSA CCCHHHEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCHHHHHHHH VQVGDPFAEKQLMEACLELIHNHSEYLVGIQDMGAAGLISSSAEMAAKAGYGMHLNLDLV HHCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHCCCHHHHCCCHHHHHHCCCCEEEEEEEC PQREEEMIPYELMLSESQERMLLCVKQGFEPAVEALFAKYESEAVKIGEVTAGDRYQLTF CCCCHHCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEE KGVQVADVPVHALVDEAPVYHQPSQKPQHISETKKQQYQPKIENLTKTFQAMLQQPTIAH CCEEEECCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH KGAIFERYDSQVQTNTISTTQSDAAVVRIRGTQKTLAMTTDANPRYLYLDPYYGGQIAVS CCCHHHHHCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCEEEECCCCCCEEEHH EAARNIVATGGIPLAITDCLNFGSPEDPESFYELEQATKGMTEACKLFDTPVISGNVSLY HHHCCEEECCCCCEEEEHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCEEECCEEEE NESNQQPIYPTPMVGMVGLIENPAWITTIDFKKSGDLIYILGETTAELNGSELQKMQLGH ECCCCCCCCCCCHHHHHHHCCCCCEEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHCCC VEGPLFNFDLRYEQEQQELLTQLIHAELLNSAHDLAEGGLAVGLAECVFASELGCDVKTN CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC LTATELFAENQARFIVTIAPDKQKIFEAQVANRATLIGQVGGKRIKIATMDDVIDVDLKN CCHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCEEEECCCCCEEEEEEECCEEECCCCC TKESWKGALAWQLN CHHHHCCEEEEEEC >Mature Secondary Structure MKELTPTEIRDQKLYLQWGISEDEYQKINDALGRLPNFTETGLFAAMWSEHCAYKNSKPL CCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCH LKQFPTTGSQILQGPGEGAGIVDIGNNQAVVFKAESHNHPTAVEPYQGAATGVGGIIRDI HHHCCCCCHHHHCCCCCCCCEEEECCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH FSMGARPIALMDSLHFGELNDAHTKYLVDQTIAGIGDYGNCMGIPTVGGETTFDTIYQNN HHCCCCCEEHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCHHHHCCCC PVMNAMCVGLLDINDQQKGAAAGVGNAIYYVGAKTGRDGIQGAIFASTKFSDEQETQRSA CCCHHHEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCHHHHHHHH VQVGDPFAEKQLMEACLELIHNHSEYLVGIQDMGAAGLISSSAEMAAKAGYGMHLNLDLV HHCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHCCCHHHHCCCHHHHHHCCCCEEEEEEEC PQREEEMIPYELMLSESQERMLLCVKQGFEPAVEALFAKYESEAVKIGEVTAGDRYQLTF CCCCHHCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEE KGVQVADVPVHALVDEAPVYHQPSQKPQHISETKKQQYQPKIENLTKTFQAMLQQPTIAH CCEEEECCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH KGAIFERYDSQVQTNTISTTQSDAAVVRIRGTQKTLAMTTDANPRYLYLDPYYGGQIAVS CCCHHHHHCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCEEEECCCCCCEEEHH EAARNIVATGGIPLAITDCLNFGSPEDPESFYELEQATKGMTEACKLFDTPVISGNVSLY HHHCCEEECCCCCEEEEHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCEEECCEEEE NESNQQPIYPTPMVGMVGLIENPAWITTIDFKKSGDLIYILGETTAELNGSELQKMQLGH ECCCCCCCCCCCHHHHHHHCCCCCEEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHCCC VEGPLFNFDLRYEQEQQELLTQLIHAELLNSAHDLAEGGLAVGLAECVFASELGCDVKTN CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC LTATELFAENQARFIVTIAPDKQKIFEAQVANRATLIGQVGGKRIKIATMDDVIDVDLKN CCHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCEEEECCCCCEEEEEEECCEEECCCCC TKESWKGALAWQLN CHHHHCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12566566 [H]