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The map label for this gene is ybbK [C]

Identifier: 116493091

GI number: 116493091

Start: 1331400

End: 1332221

Strand: Reverse

Name: ybbK [C]

Synonym: PEPE_1345

Alternate gene names: 116493091

Gene position: 1332221-1331400 (Counterclockwise)

Preceding gene: 116493092

Following gene: 116493090

Centisome position: 72.7

GC content: 39.17

Gene sequence:

>822_bases
ATGTTAGGTATTAAAATCGTTCCGCAAAATAACCAGGGTTTAGTTGAGACGTTAGGAAAGTATAGTCATAGTGTAGAATC
AGGGCTAAATTTTTATATTCCAATTTTCCAAAAAATTCGAAAGATTAGTTTGGCGATGCGACCTTTAGCGCTTCCTAATT
ATTCAATCATTACTAAGGATAATGCTGATGTTTCTGCTAGTTTAACTTTGAATTACCATGTAACGGATGCGGCTAAGTAT
CAATATGAAAATACAGACTCAGTTGAATCAATGGCTCAATTAGTTCGAGGTCACTTGCGCGATATTATTGGGCGGATGGA
CTTGAACGAAGCACTTGGTTCAACGGCTAAAATTAATCAAGAATTAGCCTTGGCAATTGGCGACTTAACTAATACATATG
GAATTAATGTCGACCGCATTAACATTGATGAATTAACACCATCGAGGGCGATTCAAGAAGCAATGGATAAACAATTAACT
GCTGATCGTGAAAGAGTTGCTACAATTGCTAGGGCAGAGGGAGAAGCCCGTTCGATTGAATTAACTACCAAAGCTAAAAA
TGATGCTATCATGGCCACTGCTAAAGCTGAAGCGGACGCAACTAAAACACGCGCAGACGCTGAACGTTATCGGATTGATA
CAGTCCAAACTGGGTTAGCTAATGCGGATGGAAAGTACTTCAAAAATCAATCGATTGAAGCCTTCTCCACACTTGCTAAA
TCAGCTGCTAATCTGGTAGTAGTTCCATCGGATGGAATGACGGAAATAGGCAATCTTCCAGTGGTAGGAAAAATGTTAGA
AAAAGGGATGGATAAAGCTTAA

Upstream 100 bases:

>100_bases
ACTTGATGATAATGGTAATGTGGTCGAAGACGCCCAATATGCCATCATTGAAGCAAATGGAAATATCTTAACTTTAAGAA
GAATATAGGGGGAATATTTG

Downstream 100 bases:

>100_bases
AATTTTGGCAGACGATTGGATGGTTTGATCGAGAGTGATTTCGACCGAAGGTTAATATTCGTGATTACTGAAACCTATAA
AAAATGAGCCGTAAAATATG

Product: membrane protease family stomatin/prohibitin-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MLGIKIVPQNNQGLVETLGKYSHSVESGLNFYIPIFQKIRKISLAMRPLALPNYSIITKDNADVSASLTLNYHVTDAAKY
QYENTDSVESMAQLVRGHLRDIIGRMDLNEALGSTAKINQELALAIGDLTNTYGINVDRINIDELTPSRAIQEAMDKQLT
ADRERVATIARAEGEARSIELTTKAKNDAIMATAKAEADATKTRADAERYRIDTVQTGLANADGKYFKNQSIEAFSTLAK
SAANLVVVPSDGMTEIGNLPVVGKMLEKGMDKA

Sequences:

>Translated_273_residues
MLGIKIVPQNNQGLVETLGKYSHSVESGLNFYIPIFQKIRKISLAMRPLALPNYSIITKDNADVSASLTLNYHVTDAAKY
QYENTDSVESMAQLVRGHLRDIIGRMDLNEALGSTAKINQELALAIGDLTNTYGINVDRINIDELTPSRAIQEAMDKQLT
ADRERVATIARAEGEARSIELTTKAKNDAIMATAKAEADATKTRADAERYRIDTVQTGLANADGKYFKNQSIEAFSTLAK
SAANLVVVPSDGMTEIGNLPVVGKMLEKGMDKA
>Mature_273_residues
MLGIKIVPQNNQGLVETLGKYSHSVESGLNFYIPIFQKIRKISLAMRPLALPNYSIITKDNADVSASLTLNYHVTDAAKY
QYENTDSVESMAQLVRGHLRDIIGRMDLNEALGSTAKINQELALAIGDLTNTYGINVDRINIDELTPSRAIQEAMDKQLT
ADRERVATIARAEGEARSIELTTKAKNDAIMATAKAEADATKTRADAERYRIDTVQTGLANADGKYFKNQSIEAFSTLAK
SAANLVVVPSDGMTEIGNLPVVGKMLEKGMDKA

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI7305503, Length=265, Percent_Identity=25.2830188679245, Blast_Score=85, Evalue=5e-17,
Organism=Escherichia coli, GI1786697, Length=283, Percent_Identity=26.8551236749117, Blast_Score=119, Evalue=1e-28,
Organism=Escherichia coli, GI1790616, Length=272, Percent_Identity=24.2647058823529, Blast_Score=64, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI32564147, Length=269, Percent_Identity=30.8550185873606, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17569493, Length=178, Percent_Identity=27.5280898876405, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI193209764, Length=178, Percent_Identity=27.5280898876405, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17569499, Length=212, Percent_Identity=26.8867924528302, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI45550506, Length=267, Percent_Identity=26.5917602996255, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI21356845, Length=161, Percent_Identity=22.9813664596273, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 29766; Mature: 29766

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGIKIVPQNNQGLVETLGKYSHSVESGLNFYIPIFQKIRKISLAMRPLALPNYSIITKD
CCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHCCCCCCCCEEEECC
NADVSASLTLNYHVTDAAKYQYENTDSVESMAQLVRGHLRDIIGRMDLNEALGSTAKINQ
CCCEEEEEEEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHCCH
ELALAIGDLTNTYGINVDRINIDELTPSRAIQEAMDKQLTADRERVATIARAEGEARSIE
HHHHHHHCCCCCCCCEEEEEEHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEE
LTTKAKNDAIMATAKAEADATKTRADAERYRIDTVQTGLANADGKYFKNQSIEAFSTLAK
EEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHHHHHH
SAANLVVVPSDGMTEIGNLPVVGKMLEKGMDKA
CCCCEEEECCCCCHHHCCCCHHHHHHHCCCCCC
>Mature Secondary Structure
MLGIKIVPQNNQGLVETLGKYSHSVESGLNFYIPIFQKIRKISLAMRPLALPNYSIITKD
CCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHCCCCCCCCEEEECC
NADVSASLTLNYHVTDAAKYQYENTDSVESMAQLVRGHLRDIIGRMDLNEALGSTAKINQ
CCCEEEEEEEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHCCH
ELALAIGDLTNTYGINVDRINIDELTPSRAIQEAMDKQLTADRERVATIARAEGEARSIE
HHHHHHHCCCCCCCCEEEEEEHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEE
LTTKAKNDAIMATAKAEADATKTRADAERYRIDTVQTGLANADGKYFKNQSIEAFSTLAK
EEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHHHHHH
SAANLVVVPSDGMTEIGNLPVVGKMLEKGMDKA
CCCCEEEECCCCCHHHCCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]