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The map label for this gene is yrrC [H]

Identifier: 116492930

GI number: 116492930

Start: 1168805

End: 1171249

Strand: Reverse

Name: yrrC [H]

Synonym: PEPE_1169

Alternate gene names: 116492930

Gene position: 1171249-1168805 (Counterclockwise)

Preceding gene: 116492931

Following gene: 116492929

Centisome position: 63.92

GC content: 37.01

Gene sequence:

>2445_bases
ATGGCATTTGAGAAAATGAATTTATTTGGCGATGCTGACCCAAAAAAGCAGTCTCAAAATAAGATGGTCGAACTGATTGG
TGAAATTAGTGCGGTCTTTTTTGAGAGCCCAGATAGTTTATTTAAAGTGCTCCTGGTTACTGTAGAAGAAGATGATTTTG
ACTGGTCCGAAGAGCAGATTGTCGTTACTGGAAATATTGGTGACGTACAAGAAGGACAGAAGTATCAATTTAATGGAAAA
CTAATTGCACATCCTAAGTATGGTATGCAAATTCAAGCTAATCAATATCGAGCGTTTATGCCAAATACAGAAGATGGTGT
TGTTACATATTTGTCGGGATCACAATTCAAAGGAATTGGAACGAAAACCGCTGAAAAAATTGTTGAAGCTTTGGGATCGG
ATGCACTTAATGAAATTAAGAAAGACCCTGGAGTTTTAAACGGTCTAAACCTTAAAGAAAAGCAAATTGATATGATTGTA
TCGGTTTTGGACCAGTCCAATGGATTAGAGGATATCCTTATAAAGCTCAGTGATATGGGGATTACAGGAAAAATTGCTAG
TAGTATCGTAAATAAATACCATGAGGATGCAATTAACATCATTGAAGAGAATCCCTACCGATTGGTCGAGGATATCGAAA
ATATTGGTTTTAAACGAGCTGATGCTATCGCTGCTAGCTTAAATATTAAACCGGATTTTGAAAAACGAATTCAAGCAGGA
ATTTTAGAAGCAATTAAAACTTGGTGTAATGCCACAGGTGATACTTATATTTTGGCAGATATGCTACTCCAAGAAGCCCG
AAAGCTTTTAGGTACGGCTGTAAATGCTGAAGCTATTGCAGATCAAGTTTTACAGCTAGGTAAAGATGGAAAAGTCGTAG
GTGAGGACGGCCAAATTTATCTGAAATGGTTATATAATGCTGAGGTCGCTATTAGTTATAACGTTAAACGCATGGTCGGT
GAATCGAATTCGAACGTTAAAGGTATTAAGCGGGCAATCAAAGCCGCTGAAAAGAATCTAAATTTAAAGTATGATGATAC
GCAGAATGCAGCGATTGAACTTGCACTTTCACATCCTCTGACAATTATTACTGGTGGCCCAGGGACAGGGAAGACTACAA
TTGTTAAGGGGTTAATTAATAGCTTTGCAGAATTAAATGATATTTCGTTGGATATTAACGAATATACGGAAAGTAAATTC
CCCATTCAGTTAGCAGCCCCAACTGGTCGAGCAGCTAAAAGATTAAGCCAAGTTACGAATGTACCAGCTAAAACTATTCA
TCGTTTGCTAGGGTTAAATGGTAATGACGATCTCCAGAATGATGAAATAAAGCAGCTTGAAGGCGATTTGTTAGTTATCG
ACGAGATGTCTATGGTTGATACTGGATTATTTAGTACGTTGGTTAATGCCATTAATCCAGATATGCAAGTGGTATTGGTA
GGAGATAAAGACCAATTACCATCAGTTGGACCAGGACAAATATTTAATGATTTAATTAAAAGTGGTAAAATTCCAACCAT
TTCGTTAACAAAAATTTATCGTCAAGAACAAGATTCATCGATTATTCAGTTAGCCCACGATATCCAAAAAGGGGTATTAC
CTGAAGATTTTACCAAAAATAAAAAAGATAAATCCTTCTTTCTAGCCAACGCTAATCAAATTGTTGACGCAATAGATCAA
ATCGCGCAAAAAGCTGTAGATAAAGGGATTTCTAAGAATGATATTCAAGTTTTAGCACCGATGTATCGAGGTAGTGCAGG
AGTAGATGAAATTAACCGACATCTACAAAAAGTTTTAAATCCACCTCAAACGGATAAACCGAAGAAAATCGAATCTGGCA
ATCAAACTTTTAGAATTGGTGATAAAGTTTTGCAATTGGTTAATTCACCTGAAAATAATATCTTTAATGGTGATATTGGC
GAAATTACCGGAATCGTTATGGAAAAGCAAGGCAAAGGCAGAGCTCATCTAGTCGTTGACTATGATGGAAATGAGGTTAC
GTATGCTAAAACTGACCTTGGACAATTGACCTTGGCATATTGTATTTCGATTCATAAATCACAAGGTAGTGAATTTCCGG
TGGTGATTATGCCTATGGTGCATCAATACTATCGAATGTTACAACGCAACCTCTTATATACAGGGCTAACTCGTGCGTCC
AATTCGATTATTTTGTTGGGTGAACCTGATGCTTACCAAAGAGCGGTAAGCAATGAATCATCTAATCGAAATACCAGTTT
AGAACGTCGAATTAATCCGCAAGTAGAAGTTTTAGCTGAAAAAGTAAACCAAATACAAGTATCAGAACCAGTTGATCAAG
AGCAATCAACGTCAGAGCCAGTGGAAGTAGAGCAACCAAAGTATTTAACTACGTCGATGGTTCAAAAAGAACAGGTAGAC
CCAATGATTGGAATGGAAGGGGTCACACCGTATGATTTTATTTAG

Upstream 100 bases:

>100_bases
TTGAACAAGCAAAAAAAATTGATAAAACGTATTTTGAAAGTAGCAAACAACGATTAATTGATATCGATAAATTACTAAGT
GAATCTAAGGAAGATGTTTA

Downstream 100 bases:

>100_bases
TTAATATCTTGAAGTGTGTAGCCTAAGTTGTCTATAATGATAGGTAGATAATAATTGGAGGTTCAGCTGTGGAAGAAAGT
AAAACAAAAAGAAGAATGAA

Product: ATP-dependent RecD/TraA family DNA helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 814; Mature: 813

Protein sequence:

>814_residues
MAFEKMNLFGDADPKKQSQNKMVELIGEISAVFFESPDSLFKVLLVTVEEDDFDWSEEQIVVTGNIGDVQEGQKYQFNGK
LIAHPKYGMQIQANQYRAFMPNTEDGVVTYLSGSQFKGIGTKTAEKIVEALGSDALNEIKKDPGVLNGLNLKEKQIDMIV
SVLDQSNGLEDILIKLSDMGITGKIASSIVNKYHEDAINIIEENPYRLVEDIENIGFKRADAIAASLNIKPDFEKRIQAG
ILEAIKTWCNATGDTYILADMLLQEARKLLGTAVNAEAIADQVLQLGKDGKVVGEDGQIYLKWLYNAEVAISYNVKRMVG
ESNSNVKGIKRAIKAAEKNLNLKYDDTQNAAIELALSHPLTIITGGPGTGKTTIVKGLINSFAELNDISLDINEYTESKF
PIQLAAPTGRAAKRLSQVTNVPAKTIHRLLGLNGNDDLQNDEIKQLEGDLLVIDEMSMVDTGLFSTLVNAINPDMQVVLV
GDKDQLPSVGPGQIFNDLIKSGKIPTISLTKIYRQEQDSSIIQLAHDIQKGVLPEDFTKNKKDKSFFLANANQIVDAIDQ
IAQKAVDKGISKNDIQVLAPMYRGSAGVDEINRHLQKVLNPPQTDKPKKIESGNQTFRIGDKVLQLVNSPENNIFNGDIG
EITGIVMEKQGKGRAHLVVDYDGNEVTYAKTDLGQLTLAYCISIHKSQGSEFPVVIMPMVHQYYRMLQRNLLYTGLTRAS
NSIILLGEPDAYQRAVSNESSNRNTSLERRINPQVEVLAEKVNQIQVSEPVDQEQSTSEPVEVEQPKYLTTSMVQKEQVD
PMIGMEGVTPYDFI

Sequences:

>Translated_814_residues
MAFEKMNLFGDADPKKQSQNKMVELIGEISAVFFESPDSLFKVLLVTVEEDDFDWSEEQIVVTGNIGDVQEGQKYQFNGK
LIAHPKYGMQIQANQYRAFMPNTEDGVVTYLSGSQFKGIGTKTAEKIVEALGSDALNEIKKDPGVLNGLNLKEKQIDMIV
SVLDQSNGLEDILIKLSDMGITGKIASSIVNKYHEDAINIIEENPYRLVEDIENIGFKRADAIAASLNIKPDFEKRIQAG
ILEAIKTWCNATGDTYILADMLLQEARKLLGTAVNAEAIADQVLQLGKDGKVVGEDGQIYLKWLYNAEVAISYNVKRMVG
ESNSNVKGIKRAIKAAEKNLNLKYDDTQNAAIELALSHPLTIITGGPGTGKTTIVKGLINSFAELNDISLDINEYTESKF
PIQLAAPTGRAAKRLSQVTNVPAKTIHRLLGLNGNDDLQNDEIKQLEGDLLVIDEMSMVDTGLFSTLVNAINPDMQVVLV
GDKDQLPSVGPGQIFNDLIKSGKIPTISLTKIYRQEQDSSIIQLAHDIQKGVLPEDFTKNKKDKSFFLANANQIVDAIDQ
IAQKAVDKGISKNDIQVLAPMYRGSAGVDEINRHLQKVLNPPQTDKPKKIESGNQTFRIGDKVLQLVNSPENNIFNGDIG
EITGIVMEKQGKGRAHLVVDYDGNEVTYAKTDLGQLTLAYCISIHKSQGSEFPVVIMPMVHQYYRMLQRNLLYTGLTRAS
NSIILLGEPDAYQRAVSNESSNRNTSLERRINPQVEVLAEKVNQIQVSEPVDQEQSTSEPVEVEQPKYLTTSMVQKEQVD
PMIGMEGVTPYDFI
>Mature_813_residues
AFEKMNLFGDADPKKQSQNKMVELIGEISAVFFESPDSLFKVLLVTVEEDDFDWSEEQIVVTGNIGDVQEGQKYQFNGKL
IAHPKYGMQIQANQYRAFMPNTEDGVVTYLSGSQFKGIGTKTAEKIVEALGSDALNEIKKDPGVLNGLNLKEKQIDMIVS
VLDQSNGLEDILIKLSDMGITGKIASSIVNKYHEDAINIIEENPYRLVEDIENIGFKRADAIAASLNIKPDFEKRIQAGI
LEAIKTWCNATGDTYILADMLLQEARKLLGTAVNAEAIADQVLQLGKDGKVVGEDGQIYLKWLYNAEVAISYNVKRMVGE
SNSNVKGIKRAIKAAEKNLNLKYDDTQNAAIELALSHPLTIITGGPGTGKTTIVKGLINSFAELNDISLDINEYTESKFP
IQLAAPTGRAAKRLSQVTNVPAKTIHRLLGLNGNDDLQNDEIKQLEGDLLVIDEMSMVDTGLFSTLVNAINPDMQVVLVG
DKDQLPSVGPGQIFNDLIKSGKIPTISLTKIYRQEQDSSIIQLAHDIQKGVLPEDFTKNKKDKSFFLANANQIVDAIDQI
AQKAVDKGISKNDIQVLAPMYRGSAGVDEINRHLQKVLNPPQTDKPKKIESGNQTFRIGDKVLQLVNSPENNIFNGDIGE
ITGIVMEKQGKGRAHLVVDYDGNEVTYAKTDLGQLTLAYCISIHKSQGSEFPVVIMPMVHQYYRMLQRNLLYTGLTRASN
SIILLGEPDAYQRAVSNESSNRNTSLERRINPQVEVLAEKVNQIQVSEPVDQEQSTSEPVEVEQPKYLTTSMVQKEQVDP
MIGMEGVTPYDFI

Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI32455236, Length=188, Percent_Identity=30.8510638297872, Blast_Score=74, Evalue=4e-13,
Organism=Escherichia coli, GI1789182, Length=465, Percent_Identity=27.741935483871, Blast_Score=119, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006345 [H]

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 89880; Mature: 89749

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: PS00445 FGGY_KINASES_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFEKMNLFGDADPKKQSQNKMVELIGEISAVFFESPDSLFKVLLVTVEEDDFDWSEEQI
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHEEEEEEEEECCCCCCCCCEE
VVTGNIGDVQEGQKYQFNGKLIAHPKYGMQIQANQYRAFMPNTEDGVVTYLSGSQFKGIG
EEECCCCCCCCCCEEEECCEEEECCCCCCEEECCCEEEECCCCCCCEEEEECCCCCCCCC
TKTAEKIVEALGSDALNEIKKDPGVLNGLNLKEKQIDMIVSVLDQSNGLEDILIKLSDMG
HHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCC
ITGKIASSIVNKYHEDAINIIEENPYRLVEDIENIGFKRADAIAASLNIKPDFEKRIQAG
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHEEEECCCCCHHHHHHHH
ILEAIKTWCNATGDTYILADMLLQEARKLLGTAVNAEAIADQVLQLGKDGKVVGEDGQIY
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEECCCCCEE
LKWLYNAEVAISYNVKRMVGESNSNVKGIKRAIKAAEKNLNLKYDDTQNAAIELALSHPL
EEEEECCEEEEEECHHHHHCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCEEEEEECCCE
TIITGGPGTGKTTIVKGLINSFAELNDISLDINEYTESKFPIQLAAPTGRAAKRLSQVTN
EEEECCCCCCHHHHHHHHHHHHHHHCCCEEEHHHHCCCCCCEEEECCCCHHHHHHHHHHC
VPAKTIHRLLGLNGNDDLQNDEIKQLEGDLLVIDEMSMVDTGLFSTLVNAINPDMQVVLV
CCHHHHHHHHCCCCCCCCCCCHHHHHCCCEEEEECHHHHHHHHHHHHHHHCCCCEEEEEE
GDKDQLPSVGPGQIFNDLIKSGKIPTISLTKIYRQEQDSSIIQLAHDIQKGVLPEDFTKN
CCCCCCCCCCCHHHHHHHHHCCCCCEEEHHHHHHHHCCHHHHHHHHHHHHCCCCCHHCCC
KKDKSFFLANANQIVDAIDQIAQKAVDKGISKNDIQVLAPMYRGSAGVDEINRHLQKVLN
CCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCCHHEEEHHHCCCCCHHHHHHHHHHHCC
PPQTDKPKKIESGNQTFRIGDKVLQLVNSPENNIFNGDIGEITGIVMEKQGKGRAHLVVD
CCCCCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCCCCHHHHEEEEEECCCCCCEEEEEE
YDGNEVTYAKTDLGQLTLAYCISIHKSQGSEFPVVIMPMVHQYYRMLQRNLLYTGLTRAS
ECCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCC
NSIILLGEPDAYQRAVSNESSNRNTSLERRINPQVEVLAEKVNQIQVSEPVDQEQSTSEP
CCEEEEECCHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHEECCCCCCCCCCCCCC
VEVEQPKYLTTSMVQKEQVDPMIGMEGVTPYDFI
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AFEKMNLFGDADPKKQSQNKMVELIGEISAVFFESPDSLFKVLLVTVEEDDFDWSEEQI
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHEEEEEEEEECCCCCCCCCEE
VVTGNIGDVQEGQKYQFNGKLIAHPKYGMQIQANQYRAFMPNTEDGVVTYLSGSQFKGIG
EEECCCCCCCCCCEEEECCEEEECCCCCCEEECCCEEEECCCCCCCEEEEECCCCCCCCC
TKTAEKIVEALGSDALNEIKKDPGVLNGLNLKEKQIDMIVSVLDQSNGLEDILIKLSDMG
HHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCC
ITGKIASSIVNKYHEDAINIIEENPYRLVEDIENIGFKRADAIAASLNIKPDFEKRIQAG
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHEEEECCCCCHHHHHHHH
ILEAIKTWCNATGDTYILADMLLQEARKLLGTAVNAEAIADQVLQLGKDGKVVGEDGQIY
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEECCCCCEE
LKWLYNAEVAISYNVKRMVGESNSNVKGIKRAIKAAEKNLNLKYDDTQNAAIELALSHPL
EEEEECCEEEEEECHHHHHCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCEEEEEECCCE
TIITGGPGTGKTTIVKGLINSFAELNDISLDINEYTESKFPIQLAAPTGRAAKRLSQVTN
EEEECCCCCCHHHHHHHHHHHHHHHCCCEEEHHHHCCCCCCEEEECCCCHHHHHHHHHHC
VPAKTIHRLLGLNGNDDLQNDEIKQLEGDLLVIDEMSMVDTGLFSTLVNAINPDMQVVLV
CCHHHHHHHHCCCCCCCCCCCHHHHHCCCEEEEECHHHHHHHHHHHHHHHCCCCEEEEEE
GDKDQLPSVGPGQIFNDLIKSGKIPTISLTKIYRQEQDSSIIQLAHDIQKGVLPEDFTKN
CCCCCCCCCCCHHHHHHHHHCCCCCEEEHHHHHHHHCCHHHHHHHHHHHHCCCCCHHCCC
KKDKSFFLANANQIVDAIDQIAQKAVDKGISKNDIQVLAPMYRGSAGVDEINRHLQKVLN
CCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCCHHEEEHHHCCCCCHHHHHHHHHHHCC
PPQTDKPKKIESGNQTFRIGDKVLQLVNSPENNIFNGDIGEITGIVMEKQGKGRAHLVVD
CCCCCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCCCCHHHHEEEEEECCCCCCEEEEEE
YDGNEVTYAKTDLGQLTLAYCISIHKSQGSEFPVVIMPMVHQYYRMLQRNLLYTGLTRAS
ECCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCC
NSIILLGEPDAYQRAVSNESSNRNTSLERRINPQVEVLAEKVNQIQVSEPVDQEQSTSEP
CCEEEEECCHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHEECCCCCCCCCCCCCC
VEVEQPKYLTTSMVQKEQVDPMIGMEGVTPYDFI
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]