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The map label for this gene is ypsC [H]

Identifier: 116492700

GI number: 116492700

Start: 937075

End: 938205

Strand: Direct

Name: ypsC [H]

Synonym: PEPE_0936

Alternate gene names: 116492700

Gene position: 937075-938205 (Clockwise)

Preceding gene: 116492699

Following gene: 116492701

Centisome position: 51.14

GC content: 37.93

Gene sequence:

>1131_bases
ATGAAGAAATTCAATTTAATTGCCACAATGGCAAGTGGTTTAGAAAGTTTAACAAAAAATGAATTAAAAGATTTGGGTTA
TGAAGTTCAAACTGAAAATGGTCGGGTTCGTTTTGAAGGGACCTTTGAAGATATTATTAAAACTAATTTATGGTTAAGAA
CCGCTGACCGAATTAAAATAGTTGTTGGTGAGTTTGAAGCTAAAACGTTCGATGATTTATTCGAATCTGTAAAGGCATTG
CCTTGGGACGAATTGATCCCTGTGGATGGAGCCTTTCCAGTTAGTGGCAAATCTAAAAAATCAACTCTTTTTAGTGTTCC
GGATGTTCAAGCTATTACTAAAAAAGCGGTTGTTGAAAAATTACGTGAGGTTTTCCATTGGCGTAATCAATTTCCAGAAA
CAGGGGCTAAATATGGTCTTGAAGTAGCCATTGATAAAGACCATGTCATGATTACCCTTGATACAACGGGTGATAGCTTA
TTCAAGCGTGGCTACCGTTTACATAAAGGTACTGCTCCACTAAAAGAAACTATGGCAGCCGCATTGGTTTTGCTAACTAA
CTGGTATCCAGACAAACCACTTGTGGATCCATTTTGTGGTTCTGGTACAGTTTTAATTGAAGCAGCCATGATTGGCCAAA
ATATTGCGCCGGGTTTTAACCGTGATTTTGCCTGTGAAGACTGGCCCATTGTCGATCAAGAAATGGTAGAACGGGTTCGT
GCTGCTGCAGATGAAAAGGCCAATTACGATGTTGAATTAGACATCACTGGTTACGATATTGATCAAAATATGATTGATAT
TGCAACTGAAAATGCGGAAGAAGCTGGATTATCTGGAATTATTTCCTTTAAGCAACAAGCAGTTAAGGACTTTAAAACTG
ATAAGAAGAATGGTGTTATGATTGGTAACCCTCCTTATGGGGAACGAATGGGGGACCAAGAGTTAGTTCGAAAGATTTAT
CGTCAATTAGGGACTGCAACGGGATCGCTAACTACCTGGAGTCGTTATTTTATCACGAGTGATTTAGATTTTGAAAATTA
CTATGGTCAAAAAGCCACTAAAAAACGTAAATTATATAATGGTGCTTTGAGAACCGATTATTTCCAATTCTGGGGTAAAC
GTGAAAGGTAG

Upstream 100 bases:

>100_bases
CATGGCTTATAGAGATTTACAAATCAGGAAAGCTAGGGTAAAAGTTATCTTTTATCCTGGCTTTTTATTTTAACTAAAAT
TTATAAATAGGGAAGTAAAT

Downstream 100 bases:

>100_bases
GTCTTGATAGTGAAAATTGCGGTTATTGGAAATGGGATTGTTGGCGCAACTTTTGTTAATGAAATTTTAGAGCGATTTCC
TGCATACCAAATTGTCCAAT

Product: N6-adenine-specific DNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MKKFNLIATMASGLESLTKNELKDLGYEVQTENGRVRFEGTFEDIIKTNLWLRTADRIKIVVGEFEAKTFDDLFESVKAL
PWDELIPVDGAFPVSGKSKKSTLFSVPDVQAITKKAVVEKLREVFHWRNQFPETGAKYGLEVAIDKDHVMITLDTTGDSL
FKRGYRLHKGTAPLKETMAAALVLLTNWYPDKPLVDPFCGSGTVLIEAAMIGQNIAPGFNRDFACEDWPIVDQEMVERVR
AAADEKANYDVELDITGYDIDQNMIDIATENAEEAGLSGIISFKQQAVKDFKTDKKNGVMIGNPPYGERMGDQELVRKIY
RQLGTATGSLTTWSRYFITSDLDFENYYGQKATKKRKLYNGALRTDYFQFWGKRER

Sequences:

>Translated_376_residues
MKKFNLIATMASGLESLTKNELKDLGYEVQTENGRVRFEGTFEDIIKTNLWLRTADRIKIVVGEFEAKTFDDLFESVKAL
PWDELIPVDGAFPVSGKSKKSTLFSVPDVQAITKKAVVEKLREVFHWRNQFPETGAKYGLEVAIDKDHVMITLDTTGDSL
FKRGYRLHKGTAPLKETMAAALVLLTNWYPDKPLVDPFCGSGTVLIEAAMIGQNIAPGFNRDFACEDWPIVDQEMVERVR
AAADEKANYDVELDITGYDIDQNMIDIATENAEEAGLSGIISFKQQAVKDFKTDKKNGVMIGNPPYGERMGDQELVRKIY
RQLGTATGSLTTWSRYFITSDLDFENYYGQKATKKRKLYNGALRTDYFQFWGKRER
>Mature_376_residues
MKKFNLIATMASGLESLTKNELKDLGYEVQTENGRVRFEGTFEDIIKTNLWLRTADRIKIVVGEFEAKTFDDLFESVKAL
PWDELIPVDGAFPVSGKSKKSTLFSVPDVQAITKKAVVEKLREVFHWRNQFPETGAKYGLEVAIDKDHVMITLDTTGDSL
FKRGYRLHKGTAPLKETMAAALVLLTNWYPDKPLVDPFCGSGTVLIEAAMIGQNIAPGFNRDFACEDWPIVDQEMVERVR
AAADEKANYDVELDITGYDIDQNMIDIATENAEEAGLSGIISFKQQAVKDFKTDKKNGVMIGNPPYGERMGDQELVRKIY
RQLGTATGSLTTWSRYFITSDLDFENYYGQKATKKRKLYNGALRTDYFQFWGKRER

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=368, Percent_Identity=31.7934782608696, Blast_Score=160, Evalue=1e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 42590; Mature: 42590

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE ; PS01261 UPF0020

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFNLIATMASGLESLTKNELKDLGYEVQTENGRVRFEGTFEDIIKTNLWLRTADRIKI
CCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEECCHHHHHHHHHEEEECCEEEE
VVGEFEAKTFDDLFESVKALPWDELIPVDGAFPVSGKSKKSTLFSVPDVQAITKKAVVEK
EEECCCHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHH
LREVFHWRNQFPETGAKYGLEVAIDKDHVMITLDTTGDSLFKRGYRLHKGTAPLKETMAA
HHHHHHHHHCCCCCHHCCCEEEEEECCEEEEEEECCCHHHHHCCCEECCCCCHHHHHHHH
ALVLLTNWYPDKPLVDPFCGSGTVLIEAAMIGQNIAPGFNRDFACEDWPIVDQEMVERVR
HHHHHHCCCCCCCCCCCCCCCCCEEEEEEHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
AAADEKANYDVELDITGYDIDQNMIDIATENAEEAGLSGIISFKQQAVKDFKTDKKNGVM
HHHCCCCCCEEEEEEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
IGNPPYGERMGDQELVRKIYRQLGTATGSLTTWSRYFITSDLDFENYYGQKATKKRKLYN
ECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCHHHHCCCHHHHHHHHHC
GALRTDYFQFWGKRER
CHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKKFNLIATMASGLESLTKNELKDLGYEVQTENGRVRFEGTFEDIIKTNLWLRTADRIKI
CCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEECCHHHHHHHHHEEEECCEEEE
VVGEFEAKTFDDLFESVKALPWDELIPVDGAFPVSGKSKKSTLFSVPDVQAITKKAVVEK
EEECCCHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHH
LREVFHWRNQFPETGAKYGLEVAIDKDHVMITLDTTGDSLFKRGYRLHKGTAPLKETMAA
HHHHHHHHHCCCCCHHCCCEEEEEECCEEEEEEECCCHHHHHCCCEECCCCCHHHHHHHH
ALVLLTNWYPDKPLVDPFCGSGTVLIEAAMIGQNIAPGFNRDFACEDWPIVDQEMVERVR
HHHHHHCCCCCCCCCCCCCCCCCEEEEEEHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
AAADEKANYDVELDITGYDIDQNMIDIATENAEEAGLSGIISFKQQAVKDFKTDKKNGVM
HHHCCCCCCEEEEEEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
IGNPPYGERMGDQELVRKIYRQLGTATGSLTTWSRYFITSDLDFENYYGQKATKKRKLYN
ECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCHHHHCCCHHHHHHHHHC
GALRTDYFQFWGKRER
CHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 2423526 [H]