| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is licR [H]
Identifier: 116492377
GI number: 116492377
Start: 637756
End: 639633
Strand: Direct
Name: licR [H]
Synonym: PEPE_0582
Alternate gene names: 116492377
Gene position: 637756-639633 (Clockwise)
Preceding gene: 116492376
Following gene: 116492381
Centisome position: 34.8
GC content: 28.81
Gene sequence:
>1878_bases ATGTCTGAAAAAAAAGAGCGAAAGATGCTGAATCTTCTAAAAAGTGATACTGATTGGCATAGCGTCCAAGAGTTATCTAT ATTTTTAGATGTATCTGATAGAACGGTTAAGAAGTACTACAAAACTTTAGCTGAAAACCAACCAGTTATATCATCTAAAT ATGGATATAAATATAATGGACCAAGTTATAGAGAAATAATTAATGAATCAAATGATGATGAAAAAATTCCAAATACCAAA CAAGAACGAATTTTCTATGTACTTAATAAGTTAATAAGCGTTAATAGTCCGATTAACATCTATGATTTGTCAGCTGAGAT TTTTACCAGTGAATCTAATCTAAAGTTAGTTTTCGGAGATGCTGAAAATTATGTAAAAAAATTTGACTTAGAAATAAAAA AACAAGGGGATTATTTTTCGATATTAGGCAGTGAAAGTGATAAAAGACATATGCTTTCCGACATGTTATATAAGGAAAGT GATGGAAACTTTATTAATAAAGTAGCTATTCAAGAAAATTTTCCAGAAGTAAACTTAGATAGTTTATATGCAATCACTCA AAAATTTGCTAAAAAAAATGAAATATATTTGAATACGTTTGATTTGAATAATATTATTCTGCATATAACTATAGCTATTC AACGGATAAGAAATGGTTATCAATTTCAAACTAGGGACAACCGTTTTAACTGGAAGAGTAGTAAATTTGCTCAAGAGCTA TTAAATGAAGTTGAAAAAAGTCAGAAGAATTTTAAATTTCCTGATGAGGATTTGGTAAGCTTAGGACTAGTTATTGACGG TTCAGTTTCTAGATGGACAATTGATATGAAAGACAACATATCAAAAGAAACTTTAAATTTAATTAAATCAATATTATCGT ATGTGAGAAGTATTTATAGAATAGATTTAACTGGACCAGAATTTCTTAATCAATTTGCGATTCATGTCAGTAGATTAATT CAAAGACTTAAAAGTGGTAAGAGTATTCAAAATCCCATGGCAACTCAAATGAAGGCTCAAAGTCCAACTGTTTATGAATG CGCAGTTTTAATTTCACATAAGATTGCTAGCCAAGTTGGAGTTGAAGTGCCAGATAATGAAATTGCCTATATTGCGATGC ATATCGGAAATGCCATTGCTAAACAGATTGAAGATAATGAACGTTTGAAAGTGATAATTGTAGTACCAGATTATCAGGAT AAATTTTTATCAATAGTTGACCAAATTGATAAAAATTTTAATAATGAATTATCAATTCTAAAGGTTGTTACAGAAGAAAC AGATTTAAGTGAAAAGGTTGATTTTTTAATAACGTTAAAAAATAAGATAAATATTGATTTACCATTTGTTCAAATATCTC CATTTTTAACTCGTACTGACAATGGCAATATTAGAAATAAAATAGAAAAAATTGTTAATACCAAAAAGCAATTAACTTTT GATCATCAAATAGGGTCGTTTTTTGATGAACGTTTCTTTAAAATAAATCGTAACCTAAAAGATAAAGAAAATGTCATAAA TTATATTTCAGATGTTTTCTATGAAGAAAACATCACAAAAAAGGACTATAGGGAAGATTTATTTGAAAGGGAAAGAATGT CCTCTACGGCTTTTGGTAAGATTGCTATTCCACATTCTTTGGAAATGAAAGCACTCAATACAAAGGGATTTATATATATA AATCCGCATGGCATTACTTGGGGGGCAAACAAGGTCTATTTAGTTTTTGCCTTGGCGGTAAAAAAACAAGATTCAAAAAT GTTTAGAAATATTTTCGATCGTCTTTCTGATGTAATGACAGAGGGGAAGAATATTGCTACCCTCGTACAGAGTACTAGTT ACGACGATTTTTTAAATAAATTAAAATCAATGATGTAA
Upstream 100 bases:
>100_bases ACTGGTATCAGAAAGTTATTTCTACTAATGGAGATGAAATTTAATAAAATGATAAGTTGTTCTTTAAGAACAGCTTATTT TATAACTTGAGGATATAAAA
Downstream 100 bases:
>100_bases TAATTTATATAAAAAAATAGCGAAAAGGGATTTTCCTTTTCGCTATTTTTTTAATTTTTATTTTGCATTAACGGTTTAAC AAACGCTGAAAAGAGAATGT
Product: transcriptional antiterminator
Products: NA
Alternate protein names: Putative phosphotransferase enzyme IIB component; Putative PTS system EIIB component; Putative phosphotransferase enzyme IIA component; Putative PTS system EIIA component [H]
Number of amino acids: Translated: 625; Mature: 624
Protein sequence:
>625_residues MSEKKERKMLNLLKSDTDWHSVQELSIFLDVSDRTVKKYYKTLAENQPVISSKYGYKYNGPSYREIINESNDDEKIPNTK QERIFYVLNKLISVNSPINIYDLSAEIFTSESNLKLVFGDAENYVKKFDLEIKKQGDYFSILGSESDKRHMLSDMLYKES DGNFINKVAIQENFPEVNLDSLYAITQKFAKKNEIYLNTFDLNNIILHITIAIQRIRNGYQFQTRDNRFNWKSSKFAQEL LNEVEKSQKNFKFPDEDLVSLGLVIDGSVSRWTIDMKDNISKETLNLIKSILSYVRSIYRIDLTGPEFLNQFAIHVSRLI QRLKSGKSIQNPMATQMKAQSPTVYECAVLISHKIASQVGVEVPDNEIAYIAMHIGNAIAKQIEDNERLKVIIVVPDYQD KFLSIVDQIDKNFNNELSILKVVTEETDLSEKVDFLITLKNKINIDLPFVQISPFLTRTDNGNIRNKIEKIVNTKKQLTF DHQIGSFFDERFFKINRNLKDKENVINYISDVFYEENITKKDYREDLFERERMSSTAFGKIAIPHSLEMKALNTKGFIYI NPHGITWGANKVYLVFALAVKKQDSKMFRNIFDRLSDVMTEGKNIATLVQSTSYDDFLNKLKSMM
Sequences:
>Translated_625_residues MSEKKERKMLNLLKSDTDWHSVQELSIFLDVSDRTVKKYYKTLAENQPVISSKYGYKYNGPSYREIINESNDDEKIPNTK QERIFYVLNKLISVNSPINIYDLSAEIFTSESNLKLVFGDAENYVKKFDLEIKKQGDYFSILGSESDKRHMLSDMLYKES DGNFINKVAIQENFPEVNLDSLYAITQKFAKKNEIYLNTFDLNNIILHITIAIQRIRNGYQFQTRDNRFNWKSSKFAQEL LNEVEKSQKNFKFPDEDLVSLGLVIDGSVSRWTIDMKDNISKETLNLIKSILSYVRSIYRIDLTGPEFLNQFAIHVSRLI QRLKSGKSIQNPMATQMKAQSPTVYECAVLISHKIASQVGVEVPDNEIAYIAMHIGNAIAKQIEDNERLKVIIVVPDYQD KFLSIVDQIDKNFNNELSILKVVTEETDLSEKVDFLITLKNKINIDLPFVQISPFLTRTDNGNIRNKIEKIVNTKKQLTF DHQIGSFFDERFFKINRNLKDKENVINYISDVFYEENITKKDYREDLFERERMSSTAFGKIAIPHSLEMKALNTKGFIYI NPHGITWGANKVYLVFALAVKKQDSKMFRNIFDRLSDVMTEGKNIATLVQSTSYDDFLNKLKSMM >Mature_624_residues SEKKERKMLNLLKSDTDWHSVQELSIFLDVSDRTVKKYYKTLAENQPVISSKYGYKYNGPSYREIINESNDDEKIPNTKQ ERIFYVLNKLISVNSPINIYDLSAEIFTSESNLKLVFGDAENYVKKFDLEIKKQGDYFSILGSESDKRHMLSDMLYKESD GNFINKVAIQENFPEVNLDSLYAITQKFAKKNEIYLNTFDLNNIILHITIAIQRIRNGYQFQTRDNRFNWKSSKFAQELL NEVEKSQKNFKFPDEDLVSLGLVIDGSVSRWTIDMKDNISKETLNLIKSILSYVRSIYRIDLTGPEFLNQFAIHVSRLIQ RLKSGKSIQNPMATQMKAQSPTVYECAVLISHKIASQVGVEVPDNEIAYIAMHIGNAIAKQIEDNERLKVIIVVPDYQDK FLSIVDQIDKNFNNELSILKVVTEETDLSEKVDFLITLKNKINIDLPFVQISPFLTRTDNGNIRNKIEKIVNTKKQLTFD HQIGSFFDERFFKINRNLKDKENVINYISDVFYEENITKKDYREDLFERERMSSTAFGKIAIPHSLEMKALNTKGFIYIN PHGITWGANKVYLVFALAVKKQDSKMFRNIFDRLSDVMTEGKNIATLVQSTSYDDFLNKLKSMM
Specific function: Positive regulator of the licABCH operon [H]
COG id: COG3711
COG function: function code K; Transcriptional antiterminator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PTS EIIB type-2 domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013196 - InterPro: IPR007737 - InterPro: IPR011608 - InterPro: IPR016152 - InterPro: IPR002178 - InterPro: IPR013011 - InterPro: IPR003501 - InterPro: IPR011991 [H]
Pfam domain/function: PF08279 HTH_11; PF05043 Mga; PF00874 PRD; PF00359 PTS_EIIA_2; PF02302 PTS_IIB [H]
EC number: =2.7.1.69 [H]
Molecular weight: Translated: 72541; Mature: 72410
Theoretical pI: Translated: 8.24; Mature: 8.24
Prosite motif: PS51094 PTS_EIIA_TYPE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEKKERKMLNLLKSDTDWHSVQELSIFLDVSDRTVKKYYKTLAENQPVISSKYGYKYNG CCCHHHHHHHHHHHCCCCHHHHEEEEEEEECCHHHHHHHHHHHHCCCCCEECCCCCCCCC PSYREIINESNDDEKIPNTKQERIFYVLNKLISVNSPINIYDLSAEIFTSESNLKLVFGD CHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCEEEECCCCEEEEECC AENYVKKFDLEIKKQGDYFSILGSESDKRHMLSDMLYKESDGNFINKVAIQENFPEVNLD HHHHHHHHCCEEECCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCHH SLYAITQKFAKKNEIYLNTFDLNNIILHITIAIQRIRNGYQFQTRDNRFNWKSSKFAQEL HHHHHHHHHHCCCCEEEEEEECCCEEEHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHH LNEVEKSQKNFKFPDEDLVSLGLVIDGSVSRWTIDMKDNISKETLNLIKSILSYVRSIYR HHHHHHHHCCCCCCCHHHHEEEEEEECCCCEEEEEHHCCCCHHHHHHHHHHHHHHHHHHE IDLTGPEFLNQFAIHVSRLIQRLKSGKSIQNPMATQMKAQSPTVYECAVLISHKIASQVG ECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCC VEVPDNEIAYIAMHIGNAIAKQIEDNERLKVIIVVPDYQDKFLSIVDQIDKNFNNELSIL CCCCCCCEEEEEEHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEE KVVTEETDLSEKVDFLITLKNKINIDLPFVQISPFLTRTDNGNIRNKIEKIVNTKKQLTF EEECCCCCCHHHCEEEEEECCCEEEEECEEEECCEEEECCCCHHHHHHHHHHCHHHHEEE DHQIGSFFDERFFKINRNLKDKENVINYISDVFYEENITKKDYREDLFERERMSSTAFGK HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCE IAIPHSLEMKALNTKGFIYINPHGITWGANKVYLVFALAVKKQDSKMFRNIFDRLSDVMT EECCCCCEEEEECCCCEEEECCCCEEECCCCEEEEEEEHHHCCHHHHHHHHHHHHHHHHH EGKNIATLVQSTSYDDFLNKLKSMM CCCCCEEHHHCCCHHHHHHHHHHCC >Mature Secondary Structure SEKKERKMLNLLKSDTDWHSVQELSIFLDVSDRTVKKYYKTLAENQPVISSKYGYKYNG CCHHHHHHHHHHHCCCCHHHHEEEEEEEECCHHHHHHHHHHHHCCCCCEECCCCCCCCC PSYREIINESNDDEKIPNTKQERIFYVLNKLISVNSPINIYDLSAEIFTSESNLKLVFGD CHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCEEEECCCCEEEEECC AENYVKKFDLEIKKQGDYFSILGSESDKRHMLSDMLYKESDGNFINKVAIQENFPEVNLD HHHHHHHHCCEEECCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCHH SLYAITQKFAKKNEIYLNTFDLNNIILHITIAIQRIRNGYQFQTRDNRFNWKSSKFAQEL HHHHHHHHHHCCCCEEEEEEECCCEEEHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHH LNEVEKSQKNFKFPDEDLVSLGLVIDGSVSRWTIDMKDNISKETLNLIKSILSYVRSIYR HHHHHHHHCCCCCCCHHHHEEEEEEECCCCEEEEEHHCCCCHHHHHHHHHHHHHHHHHHE IDLTGPEFLNQFAIHVSRLIQRLKSGKSIQNPMATQMKAQSPTVYECAVLISHKIASQVG ECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCC VEVPDNEIAYIAMHIGNAIAKQIEDNERLKVIIVVPDYQDKFLSIVDQIDKNFNNELSIL CCCCCCCEEEEEEHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEE KVVTEETDLSEKVDFLITLKNKINIDLPFVQISPFLTRTDNGNIRNKIEKIVNTKKQLTF EEECCCCCCHHHCEEEEEECCCEEEEECEEEECCEEEECCCCHHHHHHHHHHCHHHHEEE DHQIGSFFDERFFKINRNLKDKENVINYISDVFYEENITKKDYREDLFERERMSSTAFGK HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCE IAIPHSLEMKALNTKGFIYINPHGITWGANKVYLVFALAVKKQDSKMFRNIFDRLSDVMT EECCCCCEEEEECCCCEEEECCCCEEECCCCEEEEEEEHHHCCHHHHHHHHHHHHHHHHH EGKNIATLVQSTSYDDFLNKLKSMM CCCCCEEHHHCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8990303; 8969509; 9384377; 10438772 [H]