| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
Click here to switch to the map view.
The map label for this gene is 116492345
Identifier: 116492345
GI number: 116492345
Start: 606986
End: 609229
Strand: Direct
Name: 116492345
Synonym: PEPE_0550
Alternate gene names: NA
Gene position: 606986-609229 (Clockwise)
Preceding gene: 116492342
Following gene: 116492346
Centisome position: 33.13
GC content: 36.54
Gene sequence:
>2244_bases ATGGTGACAATGTTAAAGAGGAAGGTTAATTCTGATATAACTGTTATTGGGGGAGGACTGGCTGGAATTTGTGGAGCTAT TGCAGCAGCTCGTCTTGGACAAAAAGTTAGTTTAGTCCAGAATCGTGGAGTACTGGGAGGTAATTCTAGTAGTGAGGTAC GTGTTTGGGTAGCTGGTGCTACTAAACATGGTGTGAATCGTTATGCTCGAGAGACGGGGATAATGGGAGAGTTATTTGTT GAAAACCAGTATCGTAATCCTGAAGGAAATCCTTATTTATGGGATGTACTTTTGATGGAAAAGGTTAAAGCAGAACCAAA TATTCAACTATTTTTAAACACTGAAGTGACCTCGATAGTAATGAATCAAGATAAAACAATTAAAAGCGTTACTGGTTTTA TGTCAGCATCAGAAACTTTACTAGAATTTGAAAGCGGTTACTTCATTGACTGTACGGGCGATGGTTTAATCGGGTTCTTA GCGGGAGCTGAATTTAATATAGGACGCGAGAGCAGTAATGTTTACAACGAGAGTTTAGCTCCATTCGAGGCAGATGAGGA TACGCTTGGGAGTTCCTTATTTTTCTACACGCGCAACGTGGGACACCCAGTGAAATATATCAAGCCCAGTTTTGCTAAAG ACATCACAGAAACATCAATTGTAAATAACCGAATTATTCGAAAAGAGGATAACGGATGTGCCTATTGGTGGATTGAATGG GGCGGAGAATTAGATATTGTACATGATAACGAAAAAATACGAGACGAGCTACAATCAGTAGTTTATGGTATTTGGGATTA CATTAAAAATTCTGGAAAATATGATGCAGACAATCTAACCCTGGATTGGATTGGTTCAGTTCCTGGTAAACGTGAATATC GTCGTTTTAAGGGCGGATATGTATTAAAGCAACAGGATATTGAAGAACAAACATTATTTGATGATCGAATTGGATTTGGG GGATGGTCAATCGATTTACATCCAGCAAGTGGGATGTACAACGATTCTGTTGGTGCAAAGCATTCTGTTGCAGATGGTGT ATATCATATTCCTTATCGTATTTTATATTCGCGGGATATTAATAATTTGTTCTTTGCTGGACGGGATGTTTCAGTATCAC ACGTGGCTTTTGGAACAGTACGGGTAATGGCTACTTGCGCAGTAATGGGACAAGCTGCGGGTACGGCAGCTGCTTTGGCA AATGAAAAGCAAATTAAGCCAGCCGCAATTTATTCTAATTATTTGCAGGAATATCAGCAAACCTTATTGAGAGAGGATGG TTCTGTTTTAGGAGTTAAAAATGAAGATTTAAATGATTTGGCAAGAAAGGCTGAAGTGACTGCATCTAGCGCGTTAAAAG AAATTAATACATATGCGGTAGATATGGATCCGTATCCACTTGATAAAGCGGTTGCCTTCACATTGCCTGTAGATCCTAAT ATTAAAGAACTTAAACTCCTTATTTCAACGGCCAAAGCAACAGAATTAAAAGTTACTTGGTATAGCACAGGAAAACCACA GAATTATATCCCAGATTCTAAAATTGATGAACAGACAATTGAAGTTGAAGCAAACTTTATGGGATGGAAAACAGTTAATA TTGATTGGCAACCAGAACAACCACAAAATATTTTTGTGATAGTAGAAAAAAATGAAAATTGTTCTGTATATCTAGGGCAT CAAGAATTTGCCGGTGTTTTGAGCTATGTAAATGATCCAATTCAAGAATTGAGTCAGCCAGAATTACATGACTATTCACG TAAAAGTCCTTTGTTGTATTGGACTAATCAATCGATTAGTCGTCGGAACTTTGTTTTTAAAGTGGAACAAACAGAAGCAT ATTCAGCAGAAAAAATTATTAATGGGTATGTGAGACCATATGGTGGTCCTAATATGTGGGTGACTAATTTCAGAAATAAA CCAGAAGAAATTCAACTTACTTGGACGAAGCCGCAACATATAAAGCAAATTAATTTAACTTTTAATGATGACGTTAATGA AGACATTATTAACCTCCATCATCACAAAACTTACTTTGAACAGGTTCCTGAGTTAATTAAATCTTATCGAGTGTACTATC AAAGTGAGGATGAGTGGCATTTATTATGGCAAACAGATTCTAATCGAGAAAGACATATTGTCCAAAAATTAGATCAAACG ATTGAGACTAAAAAATTAAAATTTGAATTATTACAAACCAATGGTAGTCAACAAATTTCATTAAATGAGATTCGAGTTTA TTAA
Upstream 100 bases:
>100_bases CACCTCTTTTTGGTCAAAATAATACATGTTTTGGGCTTAAAAGTAAATGGAGTGGAGAATTCCTTTGTAGTACTGTTAAG ACAAAAGGAGGGATAACAAA
Downstream 100 bases:
>100_bases GGAGGTTTACTATGGAAAGTAGTCATAAAAAACTATCTACCAATATGCGCTATGTTATTTTAGCGTTAGTATTCATTAAT ATCGTAATTAATTACATGGA
Product: pyridine nucleotide-disulphide oxidoreductase
Products: NA
Alternate protein names: FAD Dependent Oxidoreductase; Coagulation Factor 5/8 Type Domain Protein; Pyridine Nucleotide-Disulfide Oxidoreductase; Glucose-Inhibited Division Protein A; Tat Pathway Signal Sequence; Protein Involved In Invasion; NADH-Dependant Oxidoreductase
Number of amino acids: Translated: 747; Mature: 747
Protein sequence:
>747_residues MVTMLKRKVNSDITVIGGGLAGICGAIAAARLGQKVSLVQNRGVLGGNSSSEVRVWVAGATKHGVNRYARETGIMGELFV ENQYRNPEGNPYLWDVLLMEKVKAEPNIQLFLNTEVTSIVMNQDKTIKSVTGFMSASETLLEFESGYFIDCTGDGLIGFL AGAEFNIGRESSNVYNESLAPFEADEDTLGSSLFFYTRNVGHPVKYIKPSFAKDITETSIVNNRIIRKEDNGCAYWWIEW GGELDIVHDNEKIRDELQSVVYGIWDYIKNSGKYDADNLTLDWIGSVPGKREYRRFKGGYVLKQQDIEEQTLFDDRIGFG GWSIDLHPASGMYNDSVGAKHSVADGVYHIPYRILYSRDINNLFFAGRDVSVSHVAFGTVRVMATCAVMGQAAGTAAALA NEKQIKPAAIYSNYLQEYQQTLLREDGSVLGVKNEDLNDLARKAEVTASSALKEINTYAVDMDPYPLDKAVAFTLPVDPN IKELKLLISTAKATELKVTWYSTGKPQNYIPDSKIDEQTIEVEANFMGWKTVNIDWQPEQPQNIFVIVEKNENCSVYLGH QEFAGVLSYVNDPIQELSQPELHDYSRKSPLLYWTNQSISRRNFVFKVEQTEAYSAEKIINGYVRPYGGPNMWVTNFRNK PEEIQLTWTKPQHIKQINLTFNDDVNEDIINLHHHKTYFEQVPELIKSYRVYYQSEDEWHLLWQTDSNRERHIVQKLDQT IETKKLKFELLQTNGSQQISLNEIRVY
Sequences:
>Translated_747_residues MVTMLKRKVNSDITVIGGGLAGICGAIAAARLGQKVSLVQNRGVLGGNSSSEVRVWVAGATKHGVNRYARETGIMGELFV ENQYRNPEGNPYLWDVLLMEKVKAEPNIQLFLNTEVTSIVMNQDKTIKSVTGFMSASETLLEFESGYFIDCTGDGLIGFL AGAEFNIGRESSNVYNESLAPFEADEDTLGSSLFFYTRNVGHPVKYIKPSFAKDITETSIVNNRIIRKEDNGCAYWWIEW GGELDIVHDNEKIRDELQSVVYGIWDYIKNSGKYDADNLTLDWIGSVPGKREYRRFKGGYVLKQQDIEEQTLFDDRIGFG GWSIDLHPASGMYNDSVGAKHSVADGVYHIPYRILYSRDINNLFFAGRDVSVSHVAFGTVRVMATCAVMGQAAGTAAALA NEKQIKPAAIYSNYLQEYQQTLLREDGSVLGVKNEDLNDLARKAEVTASSALKEINTYAVDMDPYPLDKAVAFTLPVDPN IKELKLLISTAKATELKVTWYSTGKPQNYIPDSKIDEQTIEVEANFMGWKTVNIDWQPEQPQNIFVIVEKNENCSVYLGH QEFAGVLSYVNDPIQELSQPELHDYSRKSPLLYWTNQSISRRNFVFKVEQTEAYSAEKIINGYVRPYGGPNMWVTNFRNK PEEIQLTWTKPQHIKQINLTFNDDVNEDIINLHHHKTYFEQVPELIKSYRVYYQSEDEWHLLWQTDSNRERHIVQKLDQT IETKKLKFELLQTNGSQQISLNEIRVY >Mature_747_residues MVTMLKRKVNSDITVIGGGLAGICGAIAAARLGQKVSLVQNRGVLGGNSSSEVRVWVAGATKHGVNRYARETGIMGELFV ENQYRNPEGNPYLWDVLLMEKVKAEPNIQLFLNTEVTSIVMNQDKTIKSVTGFMSASETLLEFESGYFIDCTGDGLIGFL AGAEFNIGRESSNVYNESLAPFEADEDTLGSSLFFYTRNVGHPVKYIKPSFAKDITETSIVNNRIIRKEDNGCAYWWIEW GGELDIVHDNEKIRDELQSVVYGIWDYIKNSGKYDADNLTLDWIGSVPGKREYRRFKGGYVLKQQDIEEQTLFDDRIGFG GWSIDLHPASGMYNDSVGAKHSVADGVYHIPYRILYSRDINNLFFAGRDVSVSHVAFGTVRVMATCAVMGQAAGTAAALA NEKQIKPAAIYSNYLQEYQQTLLREDGSVLGVKNEDLNDLARKAEVTASSALKEINTYAVDMDPYPLDKAVAFTLPVDPN IKELKLLISTAKATELKVTWYSTGKPQNYIPDSKIDEQTIEVEANFMGWKTVNIDWQPEQPQNIFVIVEKNENCSVYLGH QEFAGVLSYVNDPIQELSQPELHDYSRKSPLLYWTNQSISRRNFVFKVEQTEAYSAEKIINGYVRPYGGPNMWVTNFRNK PEEIQLTWTKPQHIKQINLTFNDDVNEDIINLHHHKTYFEQVPELIKSYRVYYQSEDEWHLLWQTDSNRERHIVQKLDQT IETKKLKFELLQTNGSQQISLNEIRVY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 84781; Mature: 84781
Theoretical pI: Translated: 5.10; Mature: 5.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVTMLKRKVNSDITVIGGGLAGICGAIAAARLGQKVSLVQNRGVLGGNSSSEVRVWVAGA CCCHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCEEHHHCCCCCCCCCCCEEEEEEEEC TKHGVNRYARETGIMGELFVENQYRNPEGNPYLWDVLLMEKVKAEPNIQLFLNTEVTSIV CHHHHHHHHHHHCCEEEEEEECCCCCCCCCCEEEHHHHHHHHCCCCCEEEEEECCEEEEE MNQDKTIKSVTGFMSASETLLEFESGYFIDCTGDGLIGFLAGAEFNIGRESSNVYNESLA ECCCCHHHHHHHHHHHHHHHHEECCCEEEEECCCCEEEEEECCEEECCCCCCCCHHCCCC PFEADEDTLGSSLFFYTRNVGHPVKYIKPSFAKDITETSIVNNRIIRKEDNGCAYWWIEW CCCCCCHHCCCEEEEEECCCCCCHHHCCCHHHHHHHHHHHHCCCEEEECCCCEEEEEEEE GGELDIVHDNEKIRDELQSVVYGIWDYIKNSGKYDADNLTLDWIGSVPGKREYRRFKGGY CCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHCCCE VLKQQDIEEQTLFDDRIGFGGWSIDLHPASGMYNDSVGAKHSVADGVYHIPYRILYSRDI EEECCCCCHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHCCCEEECCEEEEEECCC NNLFFAGRDVSVSHVAFGTVRVMATCAVMGQAAGTAAALANEKQIKPAAIYSNYLQEYQQ CCEEEECCCCEEHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHHH TLLREDGSVLGVKNEDLNDLARKAEVTASSALKEINTYAVDMDPYPLDKAVAFTLPVDPN HHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCEEEEEECCCCC IKELKLLISTAKATELKVTWYSTGKPQNYIPDSKIDEQTIEVEANFMGWKTVNIDWQPEQ HHHHHHHHEECCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCC PQNIFVIVEKNENCSVYLGHQEFAGVLSYVNDPIQELSQPELHDYSRKSPLLYWTNQSIS CCEEEEEEECCCCCEEEECHHHHHHHHHHHCHHHHHCCCCCCHHHCCCCCEEEECCCCCC RRNFVFKVEQTEAYSAEKIINGYVRPYGGPNMWVTNFRNKPEEIQLTWTKPQHIKQINLT CCCEEEEEECCCCCCHHHHHCCCCCCCCCCCCEEECCCCCCCEEEEEECCCCCEEEEEEE FNDDVNEDIINLHHHKTYFEQVPELIKSYRVYYQSEDEWHLLWQTDSNRERHIVQKLDQT ECCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEECCCCCHHHHHHHHHHH IETKKLKFELLQTNGSQQISLNEIRVY HHHHHEEEEEEECCCCCEEEEEEEEEC >Mature Secondary Structure MVTMLKRKVNSDITVIGGGLAGICGAIAAARLGQKVSLVQNRGVLGGNSSSEVRVWVAGA CCCHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCEEHHHCCCCCCCCCCCEEEEEEEEC TKHGVNRYARETGIMGELFVENQYRNPEGNPYLWDVLLMEKVKAEPNIQLFLNTEVTSIV CHHHHHHHHHHHCCEEEEEEECCCCCCCCCCEEEHHHHHHHHCCCCCEEEEEECCEEEEE MNQDKTIKSVTGFMSASETLLEFESGYFIDCTGDGLIGFLAGAEFNIGRESSNVYNESLA ECCCCHHHHHHHHHHHHHHHHEECCCEEEEECCCCEEEEEECCEEECCCCCCCCHHCCCC PFEADEDTLGSSLFFYTRNVGHPVKYIKPSFAKDITETSIVNNRIIRKEDNGCAYWWIEW CCCCCCHHCCCEEEEEECCCCCCHHHCCCHHHHHHHHHHHHCCCEEEECCCCEEEEEEEE GGELDIVHDNEKIRDELQSVVYGIWDYIKNSGKYDADNLTLDWIGSVPGKREYRRFKGGY CCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHCCCE VLKQQDIEEQTLFDDRIGFGGWSIDLHPASGMYNDSVGAKHSVADGVYHIPYRILYSRDI EEECCCCCHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHCCCEEECCEEEEEECCC NNLFFAGRDVSVSHVAFGTVRVMATCAVMGQAAGTAAALANEKQIKPAAIYSNYLQEYQQ CCEEEECCCCEEHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHHH TLLREDGSVLGVKNEDLNDLARKAEVTASSALKEINTYAVDMDPYPLDKAVAFTLPVDPN HHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCEEEEEECCCCC IKELKLLISTAKATELKVTWYSTGKPQNYIPDSKIDEQTIEVEANFMGWKTVNIDWQPEQ HHHHHHHHEECCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCC PQNIFVIVEKNENCSVYLGHQEFAGVLSYVNDPIQELSQPELHDYSRKSPLLYWTNQSIS CCEEEEEEECCCCCEEEECHHHHHHHHHHHCHHHHHCCCCCCHHHCCCCCEEEECCCCCC RRNFVFKVEQTEAYSAEKIINGYVRPYGGPNMWVTNFRNKPEEIQLTWTKPQHIKQINLT CCCEEEEEECCCCCCHHHHHCCCCCCCCCCCCEEECCCCCCCEEEEEECCCCCEEEEEEE FNDDVNEDIINLHHHKTYFEQVPELIKSYRVYYQSEDEWHLLWQTDSNRERHIVQKLDQT ECCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEECCCCCHHHHHHHHHHH IETKKLKFELLQTNGSQQISLNEIRVY HHHHHEEEEEEECCCCCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA