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The map label for this gene is ycnB [H]

Identifier: 116492303

GI number: 116492303

Start: 556673

End: 558046

Strand: Direct

Name: ycnB [H]

Synonym: PEPE_0503

Alternate gene names: 116492303

Gene position: 556673-558046 (Clockwise)

Preceding gene: 116492302

Following gene: 116492304

Centisome position: 30.38

GC content: 49.78

Gene sequence:

>1374_bases
ATGCACTCTCCAACGATCAAACATCGCGGGGCTTTTGTCGCCACGTTACTGACAGGTACCTTTTCGATGTCAATTTCGCA
GTCTTCTTTAAGCACCGCTTATCCTGCTTTTATGAAAGCTTTTGGTTTAGGAGCGGATACAGTTGCTTGGCTGACAACCG
GCTTTATGTTGGTGATGACCTTGATGATTCCGGTTAGTCCATGGCTATTGCATAATGTTCCTTTCCAACGGCTTTTCCAA
GCGATTGAACTCATTTTTGCCATTGGGACAGGCTTATGTATCTGGGCACCGAGTTTTATCGTGCTCATGATTGGCCGGTT
GCTTGAAGCGATTGCGGTCGGGATTATTTTCCCGAGTTTCCAGACCGTGTTGCTGACGATTACGCCGCATAGTGAGCGTG
GTCGGGTGATGGGCACGGCGGGATTGGTCATGGGCTCAGCCTTGGCAGTCGGTCCGATTATTTCCGGTGTTTTGCTGACA
TGGTTCCCTTGGCAGGCCTTATTCTTGTTCTTCTTGGTCGTTTCGCTGCTTGTGCTGGCCGTTTCAACGGTGACCATTGC
GTCTGTCATGCCATTGCAACCGACGCAACTGGACTGGGTGTCCTTCCTTTTATCCGCAAGTTTTCCAATTCTACTTTACG
CCTTGGGTGCTTTGTCGAAAAAAGGTTTAACTGTTGGCGTGGTTGGTTTGTTGATTTTAGGCATTCTGGCAGCTAGTATT
TTCGTTGCTCGGCAATTGAACCGCCAACCACCAATGTTGCAAATGCGAGTTTTTGCCACTGGTATGTTTACTAAAGCGGT
GTTTATGACTGGAATTTCATACGTCGGTTTGATTGTCACCACCATTCTGATGCCGCTTTACTTTCAAACGCTACTTGGTT
TGTCACCGTTGATTTCTGGCTTGTCCTTAGTGCCAGCTGCGGTGTTGCTGAGTATTTTGAATCCAATTAGCGGGCGTCTA
CTGGATCGCATTGGGCCGCGTGTCGTGGCCATGATTGGCATGTTGTTGATTACTGGCGGCTTTGGTCTGTTAGCAGTCTT
TGCCCATCATTTACCACTGATTGGGGCAATTATGTTGGCGATGGCGACTGAAGCCGGCAATGCCTTTGTGATGATGCCTT
CAGTGACGGCTGGCGCGAATGCTTTGCCGAATGAGCTTGTGGCAGACGGCACTGCGGTTACAACGACGGCTCGTCAGTTA
TTCGGTTCTGCCGGTGTCATGTTCGCCACAGTGTTGTTGGATGGCATGCAAACCACGCTGCGAAGTCATGCTGGCGGTTT
TGCTGTTACCTTCGCTGTGTTTGCTGGCGTGGGCCTGATTGGCTTGCTGTTGGCGTTGACGTTACCAAAGGAAGTCGCGA
AGAAAGCGGTATAG

Upstream 100 bases:

>100_bases
AACCATCTGAGATTTGGATGGGCGGTATGCAGTCTTATGAAAAAATGGGAATGAAAATGTAAACGTCCCACAATACTAAT
ATAGAAAAGATGATTTTAAT

Downstream 100 bases:

>100_bases
CTGCGAATTCGTGCTTTGCATCTACAAAAATGACCGCCTACCAAAAAGTAGACGGTCATTTTTGTTGCAACTAAGCATGC
TTGACTGGGTGCTTAGCCGC

Product: major facilitator superfamily permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 457; Mature: 457

Protein sequence:

>457_residues
MHSPTIKHRGAFVATLLTGTFSMSISQSSLSTAYPAFMKAFGLGADTVAWLTTGFMLVMTLMIPVSPWLLHNVPFQRLFQ
AIELIFAIGTGLCIWAPSFIVLMIGRLLEAIAVGIIFPSFQTVLLTITPHSERGRVMGTAGLVMGSALAVGPIISGVLLT
WFPWQALFLFFLVVSLLVLAVSTVTIASVMPLQPTQLDWVSFLLSASFPILLYALGALSKKGLTVGVVGLLILGILAASI
FVARQLNRQPPMLQMRVFATGMFTKAVFMTGISYVGLIVTTILMPLYFQTLLGLSPLISGLSLVPAAVLLSILNPISGRL
LDRIGPRVVAMIGMLLITGGFGLLAVFAHHLPLIGAIMLAMATEAGNAFVMMPSVTAGANALPNELVADGTAVTTTARQL
FGSAGVMFATVLLDGMQTTLRSHAGGFAVTFAVFAGVGLIGLLLALTLPKEVAKKAV

Sequences:

>Translated_457_residues
MHSPTIKHRGAFVATLLTGTFSMSISQSSLSTAYPAFMKAFGLGADTVAWLTTGFMLVMTLMIPVSPWLLHNVPFQRLFQ
AIELIFAIGTGLCIWAPSFIVLMIGRLLEAIAVGIIFPSFQTVLLTITPHSERGRVMGTAGLVMGSALAVGPIISGVLLT
WFPWQALFLFFLVVSLLVLAVSTVTIASVMPLQPTQLDWVSFLLSASFPILLYALGALSKKGLTVGVVGLLILGILAASI
FVARQLNRQPPMLQMRVFATGMFTKAVFMTGISYVGLIVTTILMPLYFQTLLGLSPLISGLSLVPAAVLLSILNPISGRL
LDRIGPRVVAMIGMLLITGGFGLLAVFAHHLPLIGAIMLAMATEAGNAFVMMPSVTAGANALPNELVADGTAVTTTARQL
FGSAGVMFATVLLDGMQTTLRSHAGGFAVTFAVFAGVGLIGLLLALTLPKEVAKKAV
>Mature_457_residues
MHSPTIKHRGAFVATLLTGTFSMSISQSSLSTAYPAFMKAFGLGADTVAWLTTGFMLVMTLMIPVSPWLLHNVPFQRLFQ
AIELIFAIGTGLCIWAPSFIVLMIGRLLEAIAVGIIFPSFQTVLLTITPHSERGRVMGTAGLVMGSALAVGPIISGVLLT
WFPWQALFLFFLVVSLLVLAVSTVTIASVMPLQPTQLDWVSFLLSASFPILLYALGALSKKGLTVGVVGLLILGILAASI
FVARQLNRQPPMLQMRVFATGMFTKAVFMTGISYVGLIVTTILMPLYFQTLLGLSPLISGLSLVPAAVLLSILNPISGRL
LDRIGPRVVAMIGMLLITGGFGLLAVFAHHLPLIGAIMLAMATEAGNAFVMMPSVTAGANALPNELVADGTAVTTTARQL
FGSAGVMFATVLLDGMQTTLRSHAGGFAVTFAVFAGVGLIGLLLALTLPKEVAKKAV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. EmrB family [H]

Homologues:

Organism=Escherichia coli, GI87081983, Length=344, Percent_Identity=22.3837209302326, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1789042, Length=416, Percent_Identity=20.4326923076923, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1790195, Length=422, Percent_Identity=24.8815165876777, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788710, Length=397, Percent_Identity=21.1586901763224, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004638
- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196
- InterPro:   IPR001411 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 48174; Mature: 48174

Theoretical pI: Translated: 10.87; Mature: 10.87

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSPTIKHRGAFVATLLTGTFSMSISQSSLSTAYPAFMKAFGLGADTVAWLTTGFMLVMT
CCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LMIPVSPWLLHNVPFQRLFQAIELIFAIGTGLCIWAPSFIVLMIGRLLEAIAVGIIFPSF
HHHHCCHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QTVLLTITPHSERGRVMGTAGLVMGSALAVGPIISGVLLTWFPWQALFLFFLVVSLLVLA
EEEEEEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
VSTVTIASVMPLQPTQLDWVSFLLSASFPILLYALGALSKKGLTVGVVGLLILGILAASI
HHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
FVARQLNRQPPMLQMRVFATGMFTKAVFMTGISYVGLIVTTILMPLYFQTLLGLSPLISG
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSLVPAAVLLSILNPISGRLLDRIGPRVVAMIGMLLITGGFGLLAVFAHHLPLIGAIMLA
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
MATEAGNAFVMMPSVTAGANALPNELVADGTAVTTTARQLFGSAGVMFATVLLDGMQTTL
HHHCCCCEEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
RSHAGGFAVTFAVFAGVGLIGLLLALTLPKEVAKKAV
HHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCC
>Mature Secondary Structure
MHSPTIKHRGAFVATLLTGTFSMSISQSSLSTAYPAFMKAFGLGADTVAWLTTGFMLVMT
CCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LMIPVSPWLLHNVPFQRLFQAIELIFAIGTGLCIWAPSFIVLMIGRLLEAIAVGIIFPSF
HHHHCCHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QTVLLTITPHSERGRVMGTAGLVMGSALAVGPIISGVLLTWFPWQALFLFFLVVSLLVLA
EEEEEEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
VSTVTIASVMPLQPTQLDWVSFLLSASFPILLYALGALSKKGLTVGVVGLLILGILAASI
HHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
FVARQLNRQPPMLQMRVFATGMFTKAVFMTGISYVGLIVTTILMPLYFQTLLGLSPLISG
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSLVPAAVLLSILNPISGRLLDRIGPRVVAMIGMLLITGGFGLLAVFAHHLPLIGAIMLA
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
MATEAGNAFVMMPSVTAGANALPNELVADGTAVTTTARQLFGSAGVMFATVLLDGMQTTL
HHHCCCCEEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
RSHAGGFAVTFAVFAGVGLIGLLLALTLPKEVAKKAV
HHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]