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The map label for this gene is araD [H]

Identifier: 116491978

GI number: 116491978

Start: 195108

End: 195836

Strand: Direct

Name: araD [H]

Synonym: PEPE_0164

Alternate gene names: 116491978

Gene position: 195108-195836 (Clockwise)

Preceding gene: 116491977

Following gene: 116491979

Centisome position: 10.65

GC content: 39.78

Gene sequence:

>729_bases
ATGTTAGAGAAGTTAAAACAGGAAGTTTACGAAGCAAACATGCAACTTCCTAAATTAGATTTAGTTACCTTTACTTGGGG
TAACGTTTCAGGAATTGACCGCGAAAAAGGTCTATTCGTTATCAAACCATCTGGAGTCGACTATGACAAGTTGAAACCAG
AAGATATGGTAGTAGTAAATTTGAAGGGTGAAGTTGTGGAAGGTGAAATGAATCCTTCTAGTGACACACCAACGCATACG
GTTTTGTATAACGAATTCCCAGAAATCGGTGGGATTGTACATACCCATTCTCCATGGGCTGTTTCCTTTGCCGCTGCAGA
AATTGATGTACCAGCTTTAAGTACAACCCATGCTGATACATTCTACGGCGACGTGCCGGTAACTCCGGCACTCACTAAAG
AAGAGATTGAAGGCGGTTATGAAGAAAATACTGGTAAGGTAATTGTTAAGACATTCAAGGAACGTAAGATTGATCCAGAA
GCAGTTCCAGCTGTTTTGGTTAGCCAACATGGACCATTTGCTTGGGGTAAGACGCCTGACAAAGCGGTTTACAATGCAAA
GGTTTTGGAAGTTGCTTCAGAAATTGATTACCACGCTCTTCAAATGACTAGAAGAAATATTGAAGTTCCTCAATATTTGT
TAGATAAACATTATTACCGTAAGCATGGTAAGAATGCCTACTACGGTCAAGAAAATGCTAAGTCTAAAGAACATGCAGCA
AGAAAATAA

Upstream 100 bases:

>100_bases
CAGAGGGCGTTGAAGCATATGACGAATTCACTAAGGAATATGTAGCAGGCTTACCAGTTGAAGCTCAAGCTGGAGAAGTA
ATTTAGGAGGGATAAGGTTA

Downstream 100 bases:

>100_bases
AAAAACTAAAAAATAAGGAGATTTTTATCATGAAAAAAGTACAAGATTATGAATTTTGGTTTGTTACAGGTAGTCAATTC
CTATATGGTGAAGAAACACT

Product: L-ribulose-5-phosphate 4-epimerase

Products: NA

Alternate protein names: Phosphoribulose isomerase [H]

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MLEKLKQEVYEANMQLPKLDLVTFTWGNVSGIDREKGLFVIKPSGVDYDKLKPEDMVVVNLKGEVVEGEMNPSSDTPTHT
VLYNEFPEIGGIVHTHSPWAVSFAAAEIDVPALSTTHADTFYGDVPVTPALTKEEIEGGYEENTGKVIVKTFKERKIDPE
AVPAVLVSQHGPFAWGKTPDKAVYNAKVLEVASEIDYHALQMTRRNIEVPQYLLDKHYYRKHGKNAYYGQENAKSKEHAA
RK

Sequences:

>Translated_242_residues
MLEKLKQEVYEANMQLPKLDLVTFTWGNVSGIDREKGLFVIKPSGVDYDKLKPEDMVVVNLKGEVVEGEMNPSSDTPTHT
VLYNEFPEIGGIVHTHSPWAVSFAAAEIDVPALSTTHADTFYGDVPVTPALTKEEIEGGYEENTGKVIVKTFKERKIDPE
AVPAVLVSQHGPFAWGKTPDKAVYNAKVLEVASEIDYHALQMTRRNIEVPQYLLDKHYYRKHGKNAYYGQENAKSKEHAA
RK
>Mature_242_residues
MLEKLKQEVYEANMQLPKLDLVTFTWGNVSGIDREKGLFVIKPSGVDYDKLKPEDMVVVNLKGEVVEGEMNPSSDTPTHT
VLYNEFPEIGGIVHTHSPWAVSFAAAEIDVPALSTTHADTFYGDVPVTPALTKEEIEGGYEENTGKVIVKTFKERKIDPE
AVPAVLVSQHGPFAWGKTPDKAVYNAKVLEVASEIDYHALQMTRRNIEVPQYLLDKHYYRKHGKNAYYGQENAKSKEHAA
RK

Specific function: L-arabinose catabolism; third step. [C]

COG id: COG0235

COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldolase class II family. AraD/FucA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786247, Length=231, Percent_Identity=57.5757575757576, Blast_Score=266, Evalue=8e-73,
Organism=Escherichia coli, GI1790642, Length=230, Percent_Identity=54.7826086956522, Blast_Score=266, Evalue=8e-73,
Organism=Escherichia coli, GI1790008, Length=231, Percent_Identity=55.4112554112554, Blast_Score=255, Evalue=1e-69,
Organism=Escherichia coli, GI1789164, Length=200, Percent_Identity=26.5, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 136 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001303
- InterPro:   IPR004661 [H]

Pfam domain/function: PF00596 Aldolase_II [H]

EC number: =5.1.3.4 [H]

Molecular weight: Translated: 27116; Mature: 27116

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEKLKQEVYEANMQLPKLDLVTFTWGNVSGIDREKGLFVIKPSGVDYDKLKPEDMVVVN
CHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCCHHHCCCCCEEEEE
LKGEVVEGEMNPSSDTPTHTVLYNEFPEIGGIVHTHSPWAVSFAAAEIDVPALSTTHADT
ECCEEEECCCCCCCCCCCEEEEECCCCCCCCEEECCCCCEEEEEEEEECCCCCCCCCCCC
FYGDVPVTPALTKEEIEGGYEENTGKVIVKTFKERKIDPEAVPAVLVSQHGPFAWGKTPD
EECCCCCCCCCCHHHHCCCCCCCCCEEEEEEHHHCCCCHHHHCEEEEECCCCCCCCCCCC
KAVYNAKVLEVASEIDYHALQMTRRNIEVPQYLLDKHYYRKHGKNAYYGQENAKSKEHAA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHC
RK
CC
>Mature Secondary Structure
MLEKLKQEVYEANMQLPKLDLVTFTWGNVSGIDREKGLFVIKPSGVDYDKLKPEDMVVVN
CHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCCHHHCCCCCEEEEE
LKGEVVEGEMNPSSDTPTHTVLYNEFPEIGGIVHTHSPWAVSFAAAEIDVPALSTTHADT
ECCEEEECCCCCCCCCCCEEEEECCCCCCCCEEECCCCCEEEEEEEEECCCCCCCCCCCC
FYGDVPVTPALTKEEIEGGYEENTGKVIVKTFKERKIDPEAVPAVLVSQHGPFAWGKTPD
EECCCCCCCCCCHHHHCCCCCCCCCEEEEEEHHHCCCCHHHHCEEEEECCCCCCCCCCCC
KAVYNAKVLEVASEIDYHALQMTRRNIEVPQYLLDKHYYRKHGKNAYYGQENAKSKEHAA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHC
RK
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA