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The map label for this gene is araA

Identifier: 116491979

GI number: 116491979

Start: 195866

End: 197290

Strand: Direct

Name: araA

Synonym: PEPE_0165

Alternate gene names: 116491979

Gene position: 195866-197290 (Clockwise)

Preceding gene: 116491978

Following gene: 116491980

Centisome position: 10.69

GC content: 39.72

Gene sequence:

>1425_bases
ATGAAAAAAGTACAAGATTATGAATTTTGGTTTGTTACAGGTAGTCAATTCCTATATGGTGAAGAAACACTACGCTCTGT
AGAAAAAGATGCAAAAGAAATCGTTGATAAGTTAAACGAATCAAAGAAATTGCCTTACCCAGTTAAATTCAAGCTAGTTG
CCACAACAGCTGAAAACATTACAGAGGTAATGAAAGAAGTTAACTACAATGATAAAGTTGCAGGTGTGATTACATGGATG
CACACTTTCTCGCCAGCTAAAAACTGGATTCGTGGTACAGAATTACTCCAAAAACCATTGCTACACTTAGCAACTCAATT
CTTGAACCACATTCCATATGACACAATTGACTTTGATTACATGAACTTGAACCAATCAGCTCATGGTGACCGTGAATATG
CATTCATCAACGCTCGTCTACGTAAGAACAACAAGATTATCTCAGGTTACTGGGGTGATGAAGGCATTCAAAAACAAATT
GCTAAGTGGATGGATGTTGCTGTTGCATACAACGAATCATACGGTATCAAGGTCGTAACTTTCGCCGACAAGATGCGTAA
CGTTGCTGTTACAGACGGTGACAAGATCGAAGCTCAAATCAAGTTTGGCTGGACAGTTGATTACTGGGGTGTTGCAGACC
TAGTTGAAGAAGTTAATGCCGTTTCTGACGAAGACATTGACAAGAAGTACGAAGAAATGAAGAATGACTACAACTTTGTA
GAAGGTCAAAACTCTTCCGAAAAATTCGAACACAATACTAAGTATCAAATTCGTGAATATTTCGGTTTGAAGAAGTTCAT
GGATGACCGTGGATATACAGCATTCACAACTAACTTTGAAGACTTAGCTGGTTTGGAACAATTACCAGGTTTAGCAGCAC
AAATGTTGATGGCTGAAGGTTATGGATTTGCTGGCGAAGGTGACTGGAAGACAGCTGCTTTGGACCGCTTATTGAAGATT
ATGGCTCACAACAAGCAAACTGTATTTATGGAAGATTACACACTTGATCTTCGTGAAGGTCATGAAGCAATCCTTGGATC
ACATATGCTTGAAGTTGACCCATCAATCGCCAGTGACACACCACGTGTTGAAGTACACCCATTGGACATTGGCGGTAAAG
AAGACCCTGCTCGTTTTGTATTTACAGGTATGGAAGGTGACGCTGTTGACGTTACAATGGCTGACTATGGCGACGAATTC
AAACTTATGTCATATGATGTTACTGGTAACAAGACTGAAAAAGAAACACCATATCTACCAGTCGCAAAACAACTTTGGAC
TCCAAAACAAGGTTGGAAGCAAGGTGCTGAAGGCTGGCTAACACTTGGTGGTGGACACCATACAGTTCTTTCATTTGCAA
TTGATGCTGAACAATTACAAGACCTTAGCAACATGTTTGGTTTGACATACGTTAACATCAAATAA

Upstream 100 bases:

>100_bases
GTAAGCATGGTAAGAATGCCTACTACGGTCAAGAAAATGCTAAGTCTAAAGAACATGCAGCAAGAAAATAAAAAAACTAA
AAAATAAGGAGATTTTTATC

Downstream 100 bases:

>100_bases
TGCTTTACAGTAAGATTTAAATCTTAAAAATAATTTATTCAATGCCACGAAAGAGAAATCTTTCGTGGCATTTTTGGTGG
TTAAAAAATTTTTTGAGTAT

Product: L-arabinose isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 474; Mature: 474

Protein sequence:

>474_residues
MKKVQDYEFWFVTGSQFLYGEETLRSVEKDAKEIVDKLNESKKLPYPVKFKLVATTAENITEVMKEVNYNDKVAGVITWM
HTFSPAKNWIRGTELLQKPLLHLATQFLNHIPYDTIDFDYMNLNQSAHGDREYAFINARLRKNNKIISGYWGDEGIQKQI
AKWMDVAVAYNESYGIKVVTFADKMRNVAVTDGDKIEAQIKFGWTVDYWGVADLVEEVNAVSDEDIDKKYEEMKNDYNFV
EGQNSSEKFEHNTKYQIREYFGLKKFMDDRGYTAFTTNFEDLAGLEQLPGLAAQMLMAEGYGFAGEGDWKTAALDRLLKI
MAHNKQTVFMEDYTLDLREGHEAILGSHMLEVDPSIASDTPRVEVHPLDIGGKEDPARFVFTGMEGDAVDVTMADYGDEF
KLMSYDVTGNKTEKETPYLPVAKQLWTPKQGWKQGAEGWLTLGGGHHTVLSFAIDAEQLQDLSNMFGLTYVNIK

Sequences:

>Translated_474_residues
MKKVQDYEFWFVTGSQFLYGEETLRSVEKDAKEIVDKLNESKKLPYPVKFKLVATTAENITEVMKEVNYNDKVAGVITWM
HTFSPAKNWIRGTELLQKPLLHLATQFLNHIPYDTIDFDYMNLNQSAHGDREYAFINARLRKNNKIISGYWGDEGIQKQI
AKWMDVAVAYNESYGIKVVTFADKMRNVAVTDGDKIEAQIKFGWTVDYWGVADLVEEVNAVSDEDIDKKYEEMKNDYNFV
EGQNSSEKFEHNTKYQIREYFGLKKFMDDRGYTAFTTNFEDLAGLEQLPGLAAQMLMAEGYGFAGEGDWKTAALDRLLKI
MAHNKQTVFMEDYTLDLREGHEAILGSHMLEVDPSIASDTPRVEVHPLDIGGKEDPARFVFTGMEGDAVDVTMADYGDEF
KLMSYDVTGNKTEKETPYLPVAKQLWTPKQGWKQGAEGWLTLGGGHHTVLSFAIDAEQLQDLSNMFGLTYVNIK
>Mature_474_residues
MKKVQDYEFWFVTGSQFLYGEETLRSVEKDAKEIVDKLNESKKLPYPVKFKLVATTAENITEVMKEVNYNDKVAGVITWM
HTFSPAKNWIRGTELLQKPLLHLATQFLNHIPYDTIDFDYMNLNQSAHGDREYAFINARLRKNNKIISGYWGDEGIQKQI
AKWMDVAVAYNESYGIKVVTFADKMRNVAVTDGDKIEAQIKFGWTVDYWGVADLVEEVNAVSDEDIDKKYEEMKNDYNFV
EGQNSSEKFEHNTKYQIREYFGLKKFMDDRGYTAFTTNFEDLAGLEQLPGLAAQMLMAEGYGFAGEGDWKTAALDRLLKI
MAHNKQTVFMEDYTLDLREGHEAILGSHMLEVDPSIASDTPRVEVHPLDIGGKEDPARFVFTGMEGDAVDVTMADYGDEF
KLMSYDVTGNKTEKETPYLPVAKQLWTPKQGWKQGAEGWLTLGGGHHTVLSFAIDAEQLQDLSNMFGLTYVNIK

Specific function: Catalyzes the conversion of L-arabinose to L-ribulose

COG id: COG2160

COG function: function code G; L-arabinose isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the arabinose isomerase family

Homologues:

Organism=Escherichia coli, GI1786248, Length=468, Percent_Identity=46.3675213675214, Blast_Score=456, Evalue=1e-129,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ARAA_PEDPA (Q03HQ0)

Other databases:

- EMBL:   CP000422
- RefSeq:   YP_803714.1
- ProteinModelPortal:   Q03HQ0
- SMR:   Q03HQ0
- STRING:   Q03HQ0
- GeneID:   4418644
- GenomeReviews:   CP000422_GR
- KEGG:   ppe:PEPE_0165
- NMPDR:   fig|278197.10.peg.148
- eggNOG:   COG2160
- HOGENOM:   HBG297198
- OMA:   DVAVAYN
- PhylomeDB:   Q03HQ0
- ProtClustDB:   PRK02929
- BioCyc:   PPEN278197:PEPE_0165-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00519
- InterPro:   IPR004216
- InterPro:   IPR009015
- InterPro:   IPR003762
- PIRSF:   PIRSF001478
- ProDom:   PD018364

Pfam domain/function: PF02610 Arabinose_Isome; SSF50443 Fuc_isomerase_C; SSF53743 Fuc_isomerase_N

EC number: =5.3.1.4

Molecular weight: Translated: 54057; Mature: 54057

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVQDYEFWFVTGSQFLYGEETLRSVEKDAKEIVDKLNESKKLPYPVKFKLVATTAENI
CCCCCCEEEEEEECCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECHHHH
TEVMKEVNYNDKVAGVITWMHTFSPAKNWIRGTELLQKPLLHLATQFLNHIPYDTIDFDY
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
MNLNQSAHGDREYAFINARLRKNNKIISGYWGDEGIQKQIAKWMDVAVAYNESYGIKVVT
EECCCCCCCCCEEEEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHEEECCCCCEEEEE
FADKMRNVAVTDGDKIEAQIKFGWTVDYWGVADLVEEVNAVSDEDIDKKYEEMKNDYNFV
EEHHHCCEEECCCCEEEEEEEEEEEEECCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCC
EGQNSSEKFEHNTKYQIREYFGLKKFMDDRGYTAFTTNFEDLAGLEQLPGLAAQMLMAEG
CCCCCCHHHCCCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHHCHHHCCCHHHHHHHHCC
YGFAGEGDWKTAALDRLLKIMAHNKQTVFMEDYTLDLREGHEAILGSHMLEVDPSIASDT
CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEHHCCHHHHHCCHHEEECCCCCCCC
PRVEVHPLDIGGKEDPARFVFTGMEGDAVDVTMADYGDEFKLMSYDVTGNKTEKETPYLP
CEEEEEEECCCCCCCCCEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCC
VAKQLWTPKQGWKQGAEGWLTLGGGHHTVLSFAIDAEQLQDLSNMFGLTYVNIK
CHHHHCCCHHHHHCCCCCEEEECCCCEEEEEEEECHHHHHHHHHHCCEEEEEEC
>Mature Secondary Structure
MKKVQDYEFWFVTGSQFLYGEETLRSVEKDAKEIVDKLNESKKLPYPVKFKLVATTAENI
CCCCCCEEEEEEECCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECHHHH
TEVMKEVNYNDKVAGVITWMHTFSPAKNWIRGTELLQKPLLHLATQFLNHIPYDTIDFDY
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
MNLNQSAHGDREYAFINARLRKNNKIISGYWGDEGIQKQIAKWMDVAVAYNESYGIKVVT
EECCCCCCCCCEEEEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHEEECCCCCEEEEE
FADKMRNVAVTDGDKIEAQIKFGWTVDYWGVADLVEEVNAVSDEDIDKKYEEMKNDYNFV
EEHHHCCEEECCCCEEEEEEEEEEEEECCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCC
EGQNSSEKFEHNTKYQIREYFGLKKFMDDRGYTAFTTNFEDLAGLEQLPGLAAQMLMAEG
CCCCCCHHHCCCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHHCHHHCCCHHHHHHHHCC
YGFAGEGDWKTAALDRLLKIMAHNKQTVFMEDYTLDLREGHEAILGSHMLEVDPSIASDT
CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEHHCCHHHHHCCHHEEECCCCCCCC
PRVEVHPLDIGGKEDPARFVFTGMEGDAVDVTMADYGDEFKLMSYDVTGNKTEKETPYLP
CEEEEEEECCCCCCCCCEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCC
VAKQLWTPKQGWKQGAEGWLTLGGGHHTVLSFAIDAEQLQDLSNMFGLTYVNIK
CHHHHCCCHHHHHCCCCCEEEECCCCEEEEEEEECHHHHHHHHHHCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA