| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is gdh [H]
Identifier: 116491891
GI number: 116491891
Start: 81450
End: 82235
Strand: Direct
Name: gdh [H]
Synonym: PEPE_0073
Alternate gene names: 116491891
Gene position: 81450-82235 (Clockwise)
Preceding gene: 116491890
Following gene: 116491893
Centisome position: 4.45
GC content: 41.48
Gene sequence:
>786_bases ATGTATAAAGACTTACAAGAAAAAGTAGCCGTAATTACGGGTGGTTCCAAAGGTATTGGCTCAGCCATCGCCAAACGTTT TGGTCAAGAAAAAATGAAAGTGGTCATTAACTACAATAGTGATCCAGACGGAGCTCAAAAGGCCGCTGATGAAGTAATTA ATGCTGGTGGCGAGGCAGTGACGGTTCAAGCTAATATCGCTACAGAAGCCGGAGTTAATCAATTACTTGAAACGGCGCTT GAAAAATTTGGTGACCTAGATGTCTGGGTTAATAATGCTGGGATGGAAATTAAATCACCAACTCATGAAGTACCGTTAGA AGATTGGAATAAAGTAACGGCAATTGACCAAACCGGTGTATTTTTAGGTTCACGTACTGCTTTAGCTTACTTTAAGAAGA ACCATAAAAAGGGAAACATTATTAATATGTCTTCCGTGCATGAACAAATTCCTTGGCCTACCTTTGCTAGCTATGCAGCA GCTAAGGGAAGCGTAAAATTGTTCACTCAAACGATTGCGATGGAATACGCCAAGGATAATATCCGCGTAAATGCCATTGG ACCCGGAGCGATTAATACTCCCATCAATGCCGAAAAATTTGCTGATAAGGAACAATATGATCAAACAGTCAGCATGGTAC CCATGGACCGGATTGGTAAACCTGAAGAAGTAGCTGCGGGTGCAGCATGGTTAGCATCTGACGAATCCAGTTATGTAACT GGTATTACACTATTTATCGATGGTGGAATGACGCTTTATCCAGCTTTCAAGGATGGACAAGGTTAA
Upstream 100 bases:
>100_bases GATAAGGCGTATCAAGTGCTTTTTTGGGTAAAAAATGTTTTAGTCTTAGTTATAAGGAAAAGAGACTATTTCCAAAATAG TACTTAAGGAGAGATTTGTT
Downstream 100 bases:
>100_bases GAATCACATTGGGGTAAATAAAAAAGACCGCGAACGGTCCTAAAAATAATGAATATTGATGTTTAATCATCGCGAAAATT TGGCCGCCATTAATTTTGCG
Product: glucose-1-dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 261; Mature: 261
Protein sequence:
>261_residues MYKDLQEKVAVITGGSKGIGSAIAKRFGQEKMKVVINYNSDPDGAQKAADEVINAGGEAVTVQANIATEAGVNQLLETAL EKFGDLDVWVNNAGMEIKSPTHEVPLEDWNKVTAIDQTGVFLGSRTALAYFKKNHKKGNIINMSSVHEQIPWPTFASYAA AKGSVKLFTQTIAMEYAKDNIRVNAIGPGAINTPINAEKFADKEQYDQTVSMVPMDRIGKPEEVAAGAAWLASDESSYVT GITLFIDGGMTLYPAFKDGQG
Sequences:
>Translated_261_residues MYKDLQEKVAVITGGSKGIGSAIAKRFGQEKMKVVINYNSDPDGAQKAADEVINAGGEAVTVQANIATEAGVNQLLETAL EKFGDLDVWVNNAGMEIKSPTHEVPLEDWNKVTAIDQTGVFLGSRTALAYFKKNHKKGNIINMSSVHEQIPWPTFASYAA AKGSVKLFTQTIAMEYAKDNIRVNAIGPGAINTPINAEKFADKEQYDQTVSMVPMDRIGKPEEVAAGAAWLASDESSYVT GITLFIDGGMTLYPAFKDGQG >Mature_261_residues MYKDLQEKVAVITGGSKGIGSAIAKRFGQEKMKVVINYNSDPDGAQKAADEVINAGGEAVTVQANIATEAGVNQLLETAL EKFGDLDVWVNNAGMEIKSPTHEVPLEDWNKVTAIDQTGVFLGSRTALAYFKKNHKKGNIINMSSVHEQIPWPTFASYAA AKGSVKLFTQTIAMEYAKDNIRVNAIGPGAINTPINAEKFADKEQYDQTVSMVPMDRIGKPEEVAAGAAWLASDESSYVT GITLFIDGGMTLYPAFKDGQG
Specific function: Unknown
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI19923817, Length=256, Percent_Identity=31.640625, Blast_Score=131, Evalue=6e-31, Organism=Homo sapiens, GI15277342, Length=258, Percent_Identity=31.3953488372093, Blast_Score=113, Evalue=1e-25, Organism=Homo sapiens, GI32483357, Length=253, Percent_Identity=30.0395256916996, Blast_Score=113, Evalue=2e-25, Organism=Homo sapiens, GI10190704, Length=246, Percent_Identity=30.0813008130081, Blast_Score=109, Evalue=2e-24, Organism=Homo sapiens, GI59889578, Length=202, Percent_Identity=33.6633663366337, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI40254992, Length=246, Percent_Identity=27.6422764227642, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI5031737, Length=245, Percent_Identity=26.9387755102041, Blast_Score=93, Evalue=3e-19, Organism=Homo sapiens, GI126723750, Length=252, Percent_Identity=26.1904761904762, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI4758504, Length=266, Percent_Identity=30.0751879699248, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI31542939, Length=240, Percent_Identity=29.1666666666667, Blast_Score=85, Evalue=6e-17, Organism=Homo sapiens, GI7705925, Length=247, Percent_Identity=25.9109311740891, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI4504505, Length=239, Percent_Identity=31.3807531380753, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI66933014, Length=172, Percent_Identity=30.8139534883721, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI33667109, Length=194, Percent_Identity=30.4123711340206, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI109715829, Length=235, Percent_Identity=25.531914893617, Blast_Score=75, Evalue=8e-14, Organism=Homo sapiens, GI40254986, Length=191, Percent_Identity=29.3193717277487, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI83715985, Length=266, Percent_Identity=28.1954887218045, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI4503817, Length=219, Percent_Identity=26.027397260274, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI4503301, Length=206, Percent_Identity=24.2718446601942, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI126723191, Length=186, Percent_Identity=27.4193548387097, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI224922801, Length=169, Percent_Identity=28.9940828402367, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI1788459, Length=250, Percent_Identity=35.6, Blast_Score=162, Evalue=2e-41, Organism=Escherichia coli, GI1790717, Length=248, Percent_Identity=33.4677419354839, Blast_Score=142, Evalue=2e-35, Organism=Escherichia coli, GI2367175, Length=248, Percent_Identity=37.0967741935484, Blast_Score=141, Evalue=4e-35, Organism=Escherichia coli, GI1787335, Length=250, Percent_Identity=34, Blast_Score=130, Evalue=6e-32, Organism=Escherichia coli, GI87082100, Length=256, Percent_Identity=35.546875, Blast_Score=126, Evalue=1e-30, Organism=Escherichia coli, GI1789208, Length=245, Percent_Identity=31.8367346938775, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI1789378, Length=250, Percent_Identity=30, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI87082160, Length=248, Percent_Identity=29.0322580645161, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI2367365, Length=242, Percent_Identity=30.1652892561983, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1787905, Length=246, Percent_Identity=30.8943089430894, Blast_Score=101, Evalue=5e-23, Organism=Escherichia coli, GI1786812, Length=257, Percent_Identity=26.0700389105058, Blast_Score=91, Evalue=7e-20, Organism=Escherichia coli, GI1787820, Length=216, Percent_Identity=25.9259259259259, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1789057, Length=270, Percent_Identity=27.037037037037, Blast_Score=70, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17560676, Length=255, Percent_Identity=30.1960784313725, Blast_Score=121, Evalue=4e-28, Organism=Caenorhabditis elegans, GI17559104, Length=263, Percent_Identity=33.4600760456274, Blast_Score=117, Evalue=4e-27, Organism=Caenorhabditis elegans, GI25147288, Length=253, Percent_Identity=33.201581027668, Blast_Score=114, Evalue=4e-26, Organism=Caenorhabditis elegans, GI17561402, Length=260, Percent_Identity=33.0769230769231, Blast_Score=114, Evalue=4e-26, Organism=Caenorhabditis elegans, GI71994604, Length=248, Percent_Identity=27.4193548387097, Blast_Score=113, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17555706, Length=246, Percent_Identity=34.1463414634146, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17562910, Length=270, Percent_Identity=30.7407407407407, Blast_Score=112, Evalue=3e-25, Organism=Caenorhabditis elegans, GI17562906, Length=261, Percent_Identity=30.2681992337165, Blast_Score=110, Evalue=9e-25, Organism=Caenorhabditis elegans, GI17538480, Length=273, Percent_Identity=30.7692307692308, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI71994600, Length=249, Percent_Identity=27.3092369477912, Blast_Score=109, Evalue=2e-24, Organism=Caenorhabditis elegans, GI193204405, Length=266, Percent_Identity=30.8270676691729, Blast_Score=108, Evalue=4e-24, Organism=Caenorhabditis elegans, GI17560150, Length=264, Percent_Identity=30.6818181818182, Blast_Score=103, Evalue=7e-23, Organism=Caenorhabditis elegans, GI17551412, Length=271, Percent_Identity=29.520295202952, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17562908, Length=271, Percent_Identity=28.0442804428044, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17531453, Length=264, Percent_Identity=30.3030303030303, Blast_Score=101, Evalue=5e-22, Organism=Caenorhabditis elegans, GI17560332, Length=265, Percent_Identity=30.188679245283, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17562990, Length=259, Percent_Identity=30.8880308880309, Blast_Score=97, Evalue=9e-21, Organism=Caenorhabditis elegans, GI17565030, Length=274, Percent_Identity=28.1021897810219, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17562904, Length=264, Percent_Identity=29.9242424242424, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17544670, Length=271, Percent_Identity=29.1512915129151, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17560220, Length=265, Percent_Identity=30.188679245283, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI72000259, Length=264, Percent_Identity=28.4090909090909, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17538486, Length=263, Percent_Identity=27.3764258555133, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17563726, Length=259, Percent_Identity=28.5714285714286, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI115534694, Length=248, Percent_Identity=24.1935483870968, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17508651, Length=258, Percent_Identity=27.1317829457364, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17536651, Length=254, Percent_Identity=28.3464566929134, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17536025, Length=254, Percent_Identity=27.9527559055118, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI71982365, Length=189, Percent_Identity=27.5132275132275, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17561272, Length=251, Percent_Identity=31.0756972111554, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17568967, Length=243, Percent_Identity=28.3950617283951, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17538182, Length=258, Percent_Identity=26.3565891472868, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17564282, Length=213, Percent_Identity=24.4131455399061, Blast_Score=70, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6324126, Length=247, Percent_Identity=26.7206477732794, Blast_Score=85, Evalue=1e-17, Organism=Saccharomyces cerevisiae, GI6322861, Length=201, Percent_Identity=33.3333333333333, Blast_Score=75, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6323882, Length=213, Percent_Identity=27.2300469483568, Blast_Score=69, Evalue=7e-13, Organism=Drosophila melanogaster, GI28571526, Length=251, Percent_Identity=34.2629482071713, Blast_Score=132, Evalue=2e-31, Organism=Drosophila melanogaster, GI24644339, Length=246, Percent_Identity=33.3333333333333, Blast_Score=125, Evalue=3e-29, Organism=Drosophila melanogaster, GI21357041, Length=253, Percent_Identity=33.201581027668, Blast_Score=125, Evalue=4e-29, Organism=Drosophila melanogaster, GI23397609, Length=251, Percent_Identity=31.8725099601594, Blast_Score=120, Evalue=1e-27, Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=32.4, Blast_Score=113, Evalue=1e-25, Organism=Drosophila melanogaster, GI21355319, Length=253, Percent_Identity=28.0632411067194, Blast_Score=107, Evalue=6e-24, Organism=Drosophila melanogaster, GI24643142, Length=252, Percent_Identity=26.1904761904762, Blast_Score=94, Evalue=7e-20, Organism=Drosophila melanogaster, GI24644337, Length=171, Percent_Identity=34.5029239766082, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI17737361, Length=263, Percent_Identity=28.8973384030418, Blast_Score=88, Evalue=4e-18, Organism=Drosophila melanogaster, GI18859837, Length=193, Percent_Identity=34.7150259067358, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI21357673, Length=199, Percent_Identity=29.6482412060301, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24580925, Length=203, Percent_Identity=28.0788177339901, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI21358495, Length=195, Percent_Identity=22.5641025641026, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.47 [H]
Molecular weight: Translated: 28068; Mature: 28068
Theoretical pI: Translated: 4.86; Mature: 4.86
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYKDLQEKVAVITGGSKGIGSAIAKRFGQEKMKVVINYNSDPDGAQKAADEVINAGGEAV CCCCHHCCEEEEECCCCCHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCEE TVQANIATEAGVNQLLETALEKFGDLDVWVNNAGMEIKSPTHEVPLEDWNKVTAIDQTGV EEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCCCEECCCCCCCCCCCCCCEEEEECCCE FLGSRTALAYFKKNHKKGNIINMSSVHEQIPWPTFASYAAAKGSVKLFTQTIAMEYAKDN EECCHHHHHHHHHCCCCCCEEEHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCC IRVNAIGPGAINTPINAEKFADKEQYDQTVSMVPMDRIGKPEEVAAGAAWLASDESSYVT EEEEEECCCCCCCCCCHHHHCCHHHHHHHHHCCCHHHCCCCHHHHCCCCEEECCCCCEEE GITLFIDGGMTLYPAFKDGQG EEEEEEECCEEEEEECCCCCC >Mature Secondary Structure MYKDLQEKVAVITGGSKGIGSAIAKRFGQEKMKVVINYNSDPDGAQKAADEVINAGGEAV CCCCHHCCEEEEECCCCCHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCEE TVQANIATEAGVNQLLETALEKFGDLDVWVNNAGMEIKSPTHEVPLEDWNKVTAIDQTGV EEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCCCEECCCCCCCCCCCCCCEEEEECCCE FLGSRTALAYFKKNHKKGNIINMSSVHEQIPWPTFASYAAAKGSVKLFTQTIAMEYAKDN EECCHHHHHHHHHCCCCCCEEEHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCC IRVNAIGPGAINTPINAEKFADKEQYDQTVSMVPMDRIGKPEEVAAGAAWLASDESSYVT EEEEEECCCCCCCCCCHHHHCCHHHHHHHHHCCCHHHCCCCHHHHCCCCEEECCCCCEEE GITLFIDGGMTLYPAFKDGQG EEEEEEECCEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3082854; 8969502; 9384377 [H]