| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is yegS [C]
Identifier: 116491865
GI number: 116491865
Start: 43989
End: 44879
Strand: Reverse
Name: yegS [C]
Synonym: PEPE_0047
Alternate gene names: 116491865
Gene position: 44879-43989 (Counterclockwise)
Preceding gene: 116491866
Following gene: 116491860
Centisome position: 2.45
GC content: 41.08
Gene sequence:
>891_bases ATGCCTAAATATACCGTTATTTATAATGAAGATGCTGGAAAAAATGATAATAAATCCATCGCTGAACGCTTTCAGCAAGC GGCTGAACGATTGAAGCGATCAACCACCTTAAAGGCCACGTCTAGTCGTCAAGAAGCGCTCGATTATGTAGTTGATCATA TTGATCAACTGGATACAGTTATTACGATTGGAGGAGATGGCTCCATTAATACCGTGTTTTCAGCCTTCCTTAAGGCTAAA AAATCAGTCGAAGTGGGAATTATTCCTGGTGGTACCGTCAATAATTTTGCTAAAGCACTCGAAATTCCTCAAGATGAAGA AGCCGCTTTTGATACCATTCTTAATGGTCATCCCCTCGCTGTGGATTTGGCCCATACTGAAGACCGTGCCATCATTAGTA GCCTTACACTTGGAACCCTTGCTGATATGGCCCGCCATGTCGGACAAGATGAAAAGAAAAAATGGGGACCTTTAATTTAT TTGAGTAAAGGAATTCGCCAGTTAATTGCTAAGAAATCTTACCAGATTAAAGTTAGTACTGCGGATGGCGACCATGTCTA TCGCACGCGCTTCCTATTAGCAACCACTACCAACTCAGTGGGTGGTTTTACTAATTTTGATACATCTGCATCTCCAGCAG ATGGAAAAATTCACTTGGTTATCCTGAAACATTTTTCATTCATGCGTCTTTTAGGTTACCTAAGTTATTTCCTAACTGGA CGTTTTCGAGATATCAAAGATGTTGATCAACTTACCGCTCAGGAAGTTGAAATTTCTGCCGTTGATTCACACTTGAAGGT TGAAACTCGAATTGATGGTGATCCTAGTGACCAACTCCCCATCAAACTGGGCGTAGAGCAAGGCTTCGTTCAAGTTATGG TACCTAAATAA
Upstream 100 bases:
>100_bases GCGAACACACTCATTTGGAGTAAAAATCGAAATTTACCCAATTTAAATCGATTATTTTTAGATACTTTACAAAAAAATTT AGCTCAACAAGGAGGCTCTG
Downstream 100 bases:
>100_bases TTTAACTCAAAATAAAATGGACCAACGCAATCAAAGCGTTGATCCATTTTTTATATTATCGAACCACAGTTACCGTGATA GGAGCATACTTCGCCATGTA
Product: diacylglycerol kinase family lipid kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 296; Mature: 295
Protein sequence:
>296_residues MPKYTVIYNEDAGKNDNKSIAERFQQAAERLKRSTTLKATSSRQEALDYVVDHIDQLDTVITIGGDGSINTVFSAFLKAK KSVEVGIIPGGTVNNFAKALEIPQDEEAAFDTILNGHPLAVDLAHTEDRAIISSLTLGTLADMARHVGQDEKKKWGPLIY LSKGIRQLIAKKSYQIKVSTADGDHVYRTRFLLATTTNSVGGFTNFDTSASPADGKIHLVILKHFSFMRLLGYLSYFLTG RFRDIKDVDQLTAQEVEISAVDSHLKVETRIDGDPSDQLPIKLGVEQGFVQVMVPK
Sequences:
>Translated_296_residues MPKYTVIYNEDAGKNDNKSIAERFQQAAERLKRSTTLKATSSRQEALDYVVDHIDQLDTVITIGGDGSINTVFSAFLKAK KSVEVGIIPGGTVNNFAKALEIPQDEEAAFDTILNGHPLAVDLAHTEDRAIISSLTLGTLADMARHVGQDEKKKWGPLIY LSKGIRQLIAKKSYQIKVSTADGDHVYRTRFLLATTTNSVGGFTNFDTSASPADGKIHLVILKHFSFMRLLGYLSYFLTG RFRDIKDVDQLTAQEVEISAVDSHLKVETRIDGDPSDQLPIKLGVEQGFVQVMVPK >Mature_295_residues PKYTVIYNEDAGKNDNKSIAERFQQAAERLKRSTTLKATSSRQEALDYVVDHIDQLDTVITIGGDGSINTVFSAFLKAKK SVEVGIIPGGTVNNFAKALEIPQDEEAAFDTILNGHPLAVDLAHTEDRAIISSLTLGTLADMARHVGQDEKKKWGPLIYL SKGIRQLIAKKSYQIKVSTADGDHVYRTRFLLATTTNSVGGFTNFDTSASPADGKIHLVILKHFSFMRLLGYLSYFLTGR FRDIKDVDQLTAQEVEISAVDSHLKVETRIDGDPSDQLPIKLGVEQGFVQVMVPK
Specific function: May catalyze the ATP-dependent phosphorylation of lipids other than diacylglycerol (DAG). In fact, is not able to exhibit diacylglycerol kinase activity in vitro [H]
COG id: COG1597
COG function: function code IR; Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 DAGKc domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017438 - InterPro: IPR005218 - InterPro: IPR001206 [H]
Pfam domain/function: PF00781 DAGK_cat [H]
EC number: NA
Molecular weight: Translated: 32627; Mature: 32496
Theoretical pI: Translated: 6.73; Mature: 6.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKYTVIYNEDAGKNDNKSIAERFQQAAERLKRSTTLKATSSRQEALDYVVDHIDQLDTV CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCEECCCCHHHHHHHHHHHHHCCCEE ITIGGDGSINTVFSAFLKAKKSVEVGIIPGGTVNNFAKALEIPQDEEAAFDTILNGHPLA EEECCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCHHHHHHHHCCCCCEE VDLAHTEDRAIISSLTLGTLADMARHVGQDEKKKWGPLIYLSKGIRQLIAKKSYQIKVST EEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCEEEHHHHHHHHHHCCCEEEEEEE ADGDHVYRTRFLLATTTNSVGGFTNFDTSASPADGKIHLVILKHFSFMRLLGYLSYFLTG CCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHC RFRDIKDVDQLTAQEVEISAVDSHLKVETRIDGDPSDQLPIKLGVEQGFVQVMVPK CCCCHHHHHHHHHHHEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCEEEEEECC >Mature Secondary Structure PKYTVIYNEDAGKNDNKSIAERFQQAAERLKRSTTLKATSSRQEALDYVVDHIDQLDTV CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCEECCCCHHHHHHHHHHHHHCCCEE ITIGGDGSINTVFSAFLKAKKSVEVGIIPGGTVNNFAKALEIPQDEEAAFDTILNGHPLA EEECCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCHHHHHHHHCCCCCEE VDLAHTEDRAIISSLTLGTLADMARHVGQDEKKKWGPLIYLSKGIRQLIAKKSYQIKVST EEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCEEEHHHHHHHHHHCCCEEEEEEE ADGDHVYRTRFLLATTTNSVGGFTNFDTSASPADGKIHLVILKHFSFMRLLGYLSYFLTG CCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHC RFRDIKDVDQLTAQEVEISAVDSHLKVETRIDGDPSDQLPIKLGVEQGFVQVMVPK CCCCHHHHHHHHHHHEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11463916 [H]