| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
Click here to switch to the map view.
The map label for this gene is yieF [H]
Identifier: 116491845
GI number: 116491845
Start: 26992
End: 27540
Strand: Direct
Name: yieF [H]
Synonym: PEPE_0027
Alternate gene names: 116491845
Gene position: 26992-27540 (Clockwise)
Preceding gene: 116491844
Following gene: 116491847
Centisome position: 1.47
GC content: 41.53
Gene sequence:
>549_bases ATGGCAAAAGAAATCGGCATTATCGTTGGTAGTTTGCGTGAAGGTTCATTAAATCGACTTGTGGCAAAAACATTTGAAAG TATCTTACCTAAAGAATACGAGGCAACGTGGATTGAGATTGGCGATTTGCCATTGTATAACGAAGATTTAGATCAAGGTG AAATCCCAGCAGAATGGCAAAGGCTACGTGATACTGTGCAAAATGTAGCAGGGGTAATGTTCTTTACTCCTGAATATAAT CGTTCGGTACCAGCGGCTTTAAAGAACGCAATTGATGTTGGTTCTAGACCCATGGGCGAAAACGTTTGGGGTGGCAAACC AGCTTTGGTTGTATCGGCTTCCCCTGGAGCAATTGGTGGGTTTGGGGCAAACCAACACCTTCGCCAGTCTTTGGTATTTG TTGATATGCCAACCCTTCAACAACCGGAAGCTTATATTGGTAATGTTCCGCAACATCTGGATGGTGACCATTTTGATCAA TCGACTACGCAATTCTTTAGTACCATTCTTGATTCATATTTAGATTTTTTAGAGCGTTTTACTAACTAA
Upstream 100 bases:
>100_bases TTTTAAAACGCCAACGCATATCATTATCAATTAACCACTAATTTCTCTATACTGTAGTTAAGGTATTGTTAACGCTTTAA ATACGACAAGGAGGAATTTT
Downstream 100 bases:
>100_bases CTTAAACTAAATTATGCAAATAAAAATAGCCTAACCAGACGGAAATTCCGTGGGTTAGGCTATTTTTCATTGTGCTTTTT CCCCTTTAGCACGTGATCAG
Product: flavoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 182; Mature: 181
Protein sequence:
>182_residues MAKEIGIIVGSLREGSLNRLVAKTFESILPKEYEATWIEIGDLPLYNEDLDQGEIPAEWQRLRDTVQNVAGVMFFTPEYN RSVPAALKNAIDVGSRPMGENVWGGKPALVVSASPGAIGGFGANQHLRQSLVFVDMPTLQQPEAYIGNVPQHLDGDHFDQ STTQFFSTILDSYLDFLERFTN
Sequences:
>Translated_182_residues MAKEIGIIVGSLREGSLNRLVAKTFESILPKEYEATWIEIGDLPLYNEDLDQGEIPAEWQRLRDTVQNVAGVMFFTPEYN RSVPAALKNAIDVGSRPMGENVWGGKPALVVSASPGAIGGFGANQHLRQSLVFVDMPTLQQPEAYIGNVPQHLDGDHFDQ STTQFFSTILDSYLDFLERFTN >Mature_181_residues AKEIGIIVGSLREGSLNRLVAKTFESILPKEYEATWIEIGDLPLYNEDLDQGEIPAEWQRLRDTVQNVAGVMFFTPEYNR SVPAALKNAIDVGSRPMGENVWGGKPALVVSASPGAIGGFGANQHLRQSLVFVDMPTLQQPEAYIGNVPQHLDGDHFDQS TTQFFSTILDSYLDFLERFTN
Specific function: Unknown
COG id: COG0431
COG function: function code R; Predicted flavoprotein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ssuE family [H]
Homologues:
Organism=Escherichia coli, GI1790149, Length=181, Percent_Identity=38.6740331491713, Blast_Score=119, Evalue=1e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005025 [H]
Pfam domain/function: PF03358 FMN_red [H]
EC number: NA
Molecular weight: Translated: 20174; Mature: 20043
Theoretical pI: Translated: 4.33; Mature: 4.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKEIGIIVGSLREGSLNRLVAKTFESILPKEYEATWIEIGDLPLYNEDLDQGEIPAEWQ CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHH RLRDTVQNVAGVMFFTPEYNRSVPAALKNAIDVGSRPMGENVWGGKPALVVSASPGAIGG HHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCC FGANQHLRQSLVFVDMPTLQQPEAYIGNVPQHLDGDHFDQSTTQFFSTILDSYLDFLERF CCCCHHHHHHHHEEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH TN CC >Mature Secondary Structure AKEIGIIVGSLREGSLNRLVAKTFESILPKEYEATWIEIGDLPLYNEDLDQGEIPAEWQ CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHH RLRDTVQNVAGVMFFTPEYNRSVPAALKNAIDVGSRPMGENVWGGKPALVVSASPGAIGG HHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCC FGANQHLRQSLVFVDMPTLQQPEAYIGNVPQHLDGDHFDQSTTQFFSTILDSYLDFLERF CCCCHHHHHHHHEEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH TN CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]