Click here to switch to the map view.

The map label for this gene is ytcD [H]

Identifier: 116491842

GI number: 116491842

Start: 24750

End: 25106

Strand: Reverse

Name: ytcD [H]

Synonym: PEPE_0024

Alternate gene names: 116491842

Gene position: 25106-24750 (Counterclockwise)

Preceding gene: 116491846

Following gene: 116491841

Centisome position: 1.37

GC content: 40.62

Gene sequence:

>357_bases
ATGACAAAACGAATTTATAATATTGGTGTGGAAGCGACAATGGATGTTATCGGCGGTAAATGGAAGCCCATCATCCTATG
TAACCTCCGCCATGGACAACAACGTCCTAGTGAATTACGGCGTAATATCCAAGGAATTAGTCAAAAAATGTTAACCCAAC
AACTTCGGGAGTTGGAACAGGATAACATTGTAGTTCGTAAATCATACAACACCGTTCCACCTAAAGTGGAATATTACCTA
AGCGATTATGGAAAATCGCTTGAAAAATTGCTCGACACATTGTGTAGTTGGGGCGAAATGCACGTTAGCACTTTACAAGC
TAAAGGTGAAGACGTAGCACTCGTGAAAGTCGATTAA

Upstream 100 bases:

>100_bases
ATAACTAAACTGTTTCTATTCAGCTAGTACCCACTTTATTGTGCTATACATACCAAAAAGTATGCTTTGTGTTATACTGG
CAAAAAAGGAGCGAAACTTT

Downstream 100 bases:

>100_bases
TAAGGGGCGCTAAATTATCGGTACTGCTCTGATAATTAGCGCTTTTTTATTTCACTGATAATTTATTAAATAAAAAATTA
TCTCGTAACGTTAATTGGTA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 117

Protein sequence:

>118_residues
MTKRIYNIGVEATMDVIGGKWKPIILCNLRHGQQRPSELRRNIQGISQKMLTQQLRELEQDNIVVRKSYNTVPPKVEYYL
SDYGKSLEKLLDTLCSWGEMHVSTLQAKGEDVALVKVD

Sequences:

>Translated_118_residues
MTKRIYNIGVEATMDVIGGKWKPIILCNLRHGQQRPSELRRNIQGISQKMLTQQLRELEQDNIVVRKSYNTVPPKVEYYL
SDYGKSLEKLLDTLCSWGEMHVSTLQAKGEDVALVKVD
>Mature_117_residues
TKRIYNIGVEATMDVIGGKWKPIILCNLRHGQQRPSELRRNIQGISQKMLTQQLRELEQDNIVVRKSYNTVPPKVEYYLS
DYGKSLEKLLDTLCSWGEMHVSTLQAKGEDVALVKVD

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=91, Percent_Identity=40.6593406593407, Blast_Score=77, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 13548; Mature: 13417

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKRIYNIGVEATMDVIGGKWKPIILCNLRHGQQRPSELRRNIQGISQKMLTQQLRELEQ
CCCEEEECCHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
DNIVVRKSYNTVPPKVEYYLSDYGKSLEKLLDTLCSWGEMHVSTLQAKGEDVALVKVD
CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEC
>Mature Secondary Structure 
TKRIYNIGVEATMDVIGGKWKPIILCNLRHGQQRPSELRRNIQGISQKMLTQQLRELEQ
CCEEEECCHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
DNIVVRKSYNTVPPKVEYYLSDYGKSLEKLLDTLCSWGEMHVSTLQAKGEDVALVKVD
CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]