| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is expZ [H]
Identifier: 116491834
GI number: 116491834
Start: 17257
End: 18741
Strand: Direct
Name: expZ [H]
Synonym: PEPE_0016
Alternate gene names: 116491834
Gene position: 17257-18741 (Clockwise)
Preceding gene: 116491833
Following gene: 116491835
Centisome position: 0.94
GC content: 38.65
Gene sequence:
>1485_bases ATGGGAATAATACAATTAAAAAACGTAAGCTTTAGCTACGATAACCAAATAAAACCGGTTTTTGACCAAGTAGCGTTGGA AATCGATGCGAGCTGGAAATTAGGTCTGGTTGGCAGAAATGGGCGTGGTAAAACAACGCTGATGAAGATTTTGCAGAATC AGGTTGAATATGAGGGGAAAGTGGAAACCAACCTGAAGTTCAATTATTTTCCAGCTAAAATTACTGAACCACAGGATTCG GTGCGAATGATCCTGATGAAAATTACTGGTCGCGATTACTCTGATTTCTGGGAGGTTGAGCGAGAATTAGACCAAATTGG ACTTGCTGAAGAAATTTTAGAGCAGACTTATGCATCACTAAGTCCGGGGCAACAAACTAAAGCCCTTTTAGCAGCCATGT TTGCAGATCAAAATTCATTTCAATTGATTGATGAACCAACGAATCATTTGGATGCTGCTGGCCGCGACCTTTTAGCTAAA TATTTAAAACAAAAACAAGGATACATTGTGGTTAGTCATGATCGTTACTTTTTAAATCAAGTTATTGATCATGTTATTTC AATTGATCGTGCTCAAATTAGTAGCTTTAAGGGGAATTATGAAACCTGGGCAGCTGAACGTGCCAATGCGGATGAACGTG AAATCAGTTTGAATGCCACGATGAAAAAAGATATAAAAAAATTAGAACAGGCCACGCGCCAAAAGCAAGAGTGGTCCCGA GCAACGGAACGTAAAAAAGCTGGCGCTCCGGATAAGGGTTTTGTAGGTCATAAAGCAGCTAAAGTGATGAGCAAAGCCTT GAATATTCGGGATCGGGCTGAGAAAAAATTAACAGATAAGAAACAGTTACTAAAGAATATTGAAATTCAGGATGAACTTC AATTGAATTATCAACCGTATCTTGGACCCCAAAACAATGCTTTACTAGAAGCGGATAGTTTAGTTTTACAACGAGCTGGA AAACTATTAAATCAGCCACTTAATTTTGAACTAAAGAAGAATGAGCGGATGGTTATTCAAGGCGAAAATGGTTCTGGAAA ATCAACTTTAATTAAGGCAATGTTGGGACAAAATGAACTAATTGCTGAAGGTAATCTAAAAATACGCGAAAATTTACGAA TATCATATTTACCACAGGACTTTGACCAACTCCAAGGCACACTAGAACAGTTTGCTGCCGAAAAGGAGGTTGAAGTTCAG GACTTGCTGGCAATGCTGAGAAAACTGGGTTTTGAACGTACGATGTTTGATTATCGAATTGAGCAGATGAGTATGGGACA GAAGAGAAAAGTTGCCTTAGCTCGGTCGCTGTGTGAAGAAGCCAATCTATATATTTGGGATGAACCCCTAAACTACCTAG ATGTAATCACACGGGAACAAATTCAAAATTTAGTTTTGAAGTTCAAGCCCACCTTATTAGTGGTGGAACATGATCGAGAG TTTGTCCAGAAAATTGCAACGCAGACCGTTAACTTAAAAAAATAA
Upstream 100 bases:
>100_bases TTTTTATTGGTATTATGCACTTTGTATTGCATCAGGCCTGCACACCTGGTGCTTTTTTATGCCTTAAAACGAACTACTCC TCGAAAGAGAGGAGACATAA
Downstream 100 bases:
>100_bases GCAAATAATTTTGACACGGTGTCACTTTGTGCTATTCTAGCATTGTTGACACGGTGTCATTTTTATTTTAAGGAGGTGGA GGAGTGGCTTCAGATGTTTT
Product: ABC transporter ATPase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 494; Mature: 493
Protein sequence:
>494_residues MGIIQLKNVSFSYDNQIKPVFDQVALEIDASWKLGLVGRNGRGKTTLMKILQNQVEYEGKVETNLKFNYFPAKITEPQDS VRMILMKITGRDYSDFWEVERELDQIGLAEEILEQTYASLSPGQQTKALLAAMFADQNSFQLIDEPTNHLDAAGRDLLAK YLKQKQGYIVVSHDRYFLNQVIDHVISIDRAQISSFKGNYETWAAERANADEREISLNATMKKDIKKLEQATRQKQEWSR ATERKKAGAPDKGFVGHKAAKVMSKALNIRDRAEKKLTDKKQLLKNIEIQDELQLNYQPYLGPQNNALLEADSLVLQRAG KLLNQPLNFELKKNERMVIQGENGSGKSTLIKAMLGQNELIAEGNLKIRENLRISYLPQDFDQLQGTLEQFAAEKEVEVQ DLLAMLRKLGFERTMFDYRIEQMSMGQKRKVALARSLCEEANLYIWDEPLNYLDVITREQIQNLVLKFKPTLLVVEHDRE FVQKIATQTVNLKK
Sequences:
>Translated_494_residues MGIIQLKNVSFSYDNQIKPVFDQVALEIDASWKLGLVGRNGRGKTTLMKILQNQVEYEGKVETNLKFNYFPAKITEPQDS VRMILMKITGRDYSDFWEVERELDQIGLAEEILEQTYASLSPGQQTKALLAAMFADQNSFQLIDEPTNHLDAAGRDLLAK YLKQKQGYIVVSHDRYFLNQVIDHVISIDRAQISSFKGNYETWAAERANADEREISLNATMKKDIKKLEQATRQKQEWSR ATERKKAGAPDKGFVGHKAAKVMSKALNIRDRAEKKLTDKKQLLKNIEIQDELQLNYQPYLGPQNNALLEADSLVLQRAG KLLNQPLNFELKKNERMVIQGENGSGKSTLIKAMLGQNELIAEGNLKIRENLRISYLPQDFDQLQGTLEQFAAEKEVEVQ DLLAMLRKLGFERTMFDYRIEQMSMGQKRKVALARSLCEEANLYIWDEPLNYLDVITREQIQNLVLKFKPTLLVVEHDRE FVQKIATQTVNLKK >Mature_493_residues GIIQLKNVSFSYDNQIKPVFDQVALEIDASWKLGLVGRNGRGKTTLMKILQNQVEYEGKVETNLKFNYFPAKITEPQDSV RMILMKITGRDYSDFWEVERELDQIGLAEEILEQTYASLSPGQQTKALLAAMFADQNSFQLIDEPTNHLDAAGRDLLAKY LKQKQGYIVVSHDRYFLNQVIDHVISIDRAQISSFKGNYETWAAERANADEREISLNATMKKDIKKLEQATRQKQEWSRA TERKKAGAPDKGFVGHKAAKVMSKALNIRDRAEKKLTDKKQLLKNIEIQDELQLNYQPYLGPQNNALLEADSLVLQRAGK LLNQPLNFELKKNERMVIQGENGSGKSTLIKAMLGQNELIAEGNLKIRENLRISYLPQDFDQLQGTLEQFAAEKEVEVQD LLAMLRKLGFERTMFDYRIEQMSMGQKRKVALARSLCEEANLYIWDEPLNYLDVITREQIQNLVLKFKPTLLVVEHDREF VQKIATQTVNLKK
Specific function: Unknown
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=538, Percent_Identity=24.1635687732342, Blast_Score=115, Evalue=1e-25, Organism=Homo sapiens, GI27881506, Length=523, Percent_Identity=22.9445506692161, Blast_Score=98, Evalue=2e-20, Organism=Homo sapiens, GI10947137, Length=523, Percent_Identity=22.9445506692161, Blast_Score=98, Evalue=2e-20, Organism=Homo sapiens, GI108773784, Length=158, Percent_Identity=31.6455696202532, Blast_Score=72, Evalue=2e-12, Organism=Homo sapiens, GI108773782, Length=158, Percent_Identity=31.6455696202532, Blast_Score=72, Evalue=2e-12, Organism=Homo sapiens, GI69354671, Length=191, Percent_Identity=29.3193717277487, Blast_Score=68, Evalue=2e-11, Organism=Homo sapiens, GI10947135, Length=191, Percent_Identity=29.3193717277487, Blast_Score=68, Evalue=2e-11, Organism=Escherichia coli, GI1787041, Length=544, Percent_Identity=26.8382352941176, Blast_Score=154, Evalue=1e-38, Organism=Escherichia coli, GI2367384, Length=525, Percent_Identity=25.3333333333333, Blast_Score=149, Evalue=4e-37, Organism=Escherichia coli, GI1787182, Length=537, Percent_Identity=26.4432029795158, Blast_Score=147, Evalue=1e-36, Organism=Escherichia coli, GI1789751, Length=518, Percent_Identity=23.9382239382239, Blast_Score=144, Evalue=1e-35, Organism=Escherichia coli, GI1789962, Length=194, Percent_Identity=25.7731958762887, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1788165, Length=166, Percent_Identity=29.5180722891566, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1790467, Length=193, Percent_Identity=26.4248704663212, Blast_Score=62, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17559834, Length=540, Percent_Identity=24.4444444444444, Blast_Score=123, Evalue=2e-28, Organism=Caenorhabditis elegans, GI17553372, Length=502, Percent_Identity=25.4980079681275, Blast_Score=104, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17555318, Length=203, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17555800, Length=170, Percent_Identity=31.1764705882353, Blast_Score=67, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6320874, Length=533, Percent_Identity=24.765478424015, Blast_Score=101, Evalue=3e-22, Organism=Saccharomyces cerevisiae, GI6321121, Length=219, Percent_Identity=30.1369863013699, Blast_Score=91, Evalue=6e-19, Organism=Saccharomyces cerevisiae, GI6324314, Length=177, Percent_Identity=29.3785310734463, Blast_Score=84, Evalue=7e-17, Organism=Saccharomyces cerevisiae, GI6325030, Length=227, Percent_Identity=28.1938325991189, Blast_Score=82, Evalue=3e-16, Organism=Saccharomyces cerevisiae, GI6323278, Length=211, Percent_Identity=27.9620853080569, Blast_Score=75, Evalue=2e-14, Organism=Drosophila melanogaster, GI24666836, Length=540, Percent_Identity=24.0740740740741, Blast_Score=122, Evalue=5e-28, Organism=Drosophila melanogaster, GI24642252, Length=535, Percent_Identity=22.803738317757, Blast_Score=100, Evalue=4e-21, Organism=Drosophila melanogaster, GI18859989, Length=535, Percent_Identity=22.803738317757, Blast_Score=100, Evalue=4e-21, Organism=Drosophila melanogaster, GI24641342, Length=211, Percent_Identity=26.5402843601896, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI24661270, Length=154, Percent_Identity=31.1688311688312, Blast_Score=67, Evalue=3e-11, Organism=Drosophila melanogaster, GI21355589, Length=154, Percent_Identity=31.1688311688312, Blast_Score=67, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 56737; Mature: 56606
Theoretical pI: Translated: 8.68; Mature: 8.68
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGIIQLKNVSFSYDNQIKPVFDQVALEIDASWKLGLVGRNGRGKTTLMKILQNQVEYEGK CCEEEEECCCCCCCCCCHHHHHHHHEEECCCEEEEEEECCCCCHHHHHHHHHHHHCCCCC VETNLKFNYFPAKITEPQDSVRMILMKITGRDYSDFWEVERELDQIGLAEEILEQTYASL EECCEEEEEECCCCCCCHHHHHEEEHEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHC SPGQQTKALLAAMFADQNSFQLIDEPTNHLDAAGRDLLAKYLKQKQGYIVVSHDRYFLNQ CCCHHHHHHHHHHHCCCCCCEECCCCCHHHHHCCHHHHHHHHHCCCCEEEEECCHHHHHH VIDHVISIDRAQISSFKGNYETWAAERANADEREISLNATMKKDIKKLEQATRQKQEWSR HHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHH ATERKKAGAPDKGFVGHKAAKVMSKALNIRDRAEKKLTDKKQLLKNIEIQDELQLNYQPY HHHHHHCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCC LGPQNNALLEADSLVLQRAGKLLNQPLNFELKKNERMVIQGENGSGKSTLIKAMLGQNEL CCCCCCCEEHHHHHHHHHHHHHHCCCCCEEEECCCEEEEECCCCCCHHHHHHHHHCCCCE IAEGNLKIRENLRISYLPQDFDQLQGTLEQFAAEKEVEVQDLLAMLRKLGFERTMFDYRI EECCCCEEECCCEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHH EQMSMGQKRKVALARSLCEEANLYIWDEPLNYLDVITREQIQNLVLKFKPTLLVVEHDRE HHHHCCCHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHH FVQKIATQTVNLKK HHHHHHHHCCCCCC >Mature Secondary Structure GIIQLKNVSFSYDNQIKPVFDQVALEIDASWKLGLVGRNGRGKTTLMKILQNQVEYEGK CEEEEECCCCCCCCCCHHHHHHHHEEECCCEEEEEEECCCCCHHHHHHHHHHHHCCCCC VETNLKFNYFPAKITEPQDSVRMILMKITGRDYSDFWEVERELDQIGLAEEILEQTYASL EECCEEEEEECCCCCCCHHHHHEEEHEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHC SPGQQTKALLAAMFADQNSFQLIDEPTNHLDAAGRDLLAKYLKQKQGYIVVSHDRYFLNQ CCCHHHHHHHHHHHCCCCCCEECCCCCHHHHHCCHHHHHHHHHCCCCEEEEECCHHHHHH VIDHVISIDRAQISSFKGNYETWAAERANADEREISLNATMKKDIKKLEQATRQKQEWSR HHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHH ATERKKAGAPDKGFVGHKAAKVMSKALNIRDRAEKKLTDKKQLLKNIEIQDELQLNYQPY HHHHHHCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCC LGPQNNALLEADSLVLQRAGKLLNQPLNFELKKNERMVIQGENGSGKSTLIKAMLGQNEL CCCCCCCEEHHHHHHHHHHHHHHCCCCCEEEECCCEEEEECCCCCCHHHHHHHHHCCCCE IAEGNLKIRENLRISYLPQDFDQLQGTLEQFAAEKEVEVQDLLAMLRKLGFERTMFDYRI EECCCCEEECCCEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHH EQMSMGQKRKVALARSLCEEANLYIWDEPLNYLDVITREQIQNLVLKFKPTLLVVEHDRE HHHHCCCHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHH FVQKIATQTVNLKK HHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]