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The map label for this gene is ybdL [C]

Identifier: 116328640

GI number: 116328640

Start: 2337873

End: 2338985

Strand: Direct

Name: ybdL [C]

Synonym: LBL_2003

Alternate gene names: 116328640

Gene position: 2337873-2338985 (Clockwise)

Preceding gene: 116328633

Following gene: 116328641

Centisome position: 64.68

GC content: 43.22

Gene sequence:

>1113_bases
ATGAGTCAGAGTACGTTAGAGTATATTTTAGCAAATCGTATCCAAGGTTTGGATACTTCCGCCATCCGTAAAGCATTTGA
ACTTGCAAGTACATTGAAAAATCCGATCAATCTTTCCATCGGTCAACCTCATTTCCCTTGTCCTTCCAATATCATAGATG
CCGGTTGTAGGGCCCTCAAAGACGGTAAAACCGCTTATACTCTCACCGGAGGAATTCCAGAACTAAAGAGCGCTCTCGCC
GAAAAATACAAAAGCGGAAACGGAATTTCCTACGCAACCCCCGAAAGAATCCTCGTTACTTCCGGAATCAGCTCCGCGTT
TCTGCTTTTATTCAACGCGTTGTTAAACGAAGGGGACGAATGTTTAGTCGTAACTCCGCACTTTTTGATGTATCCGGCGT
ATATCAAAATCTACGGCGGAAAAATGTATTCGATCCACGAATCCTTCGAACCGGAAGCTCTGAAAGAATTTGCTAATAGG
AAGTTGAAAATCATCATCTATTCTTCCCCGTCCAATCCTACTGGAAAAATTCTTTCGCGCAAACAACTGGAGGCTCTAGC
CGATCTCGCGGAAAAAACAGGGGCTTACCTGATCTCGGACGAAATCTACGAACTTTTCGACTACGACAAAAAATTCATTT
CCGTCGGTTCTTTTTACGACAAGGCAATCACCCTTTCCGGTTTTTCCAAAACGTACAGCATGACAGGTCTTCGATTGTCT
TCGATTCTCGCGCCGGAACCCATCACAAAAGTCTTAACTACTTTGCAACAATACACTTTAGTCTGCGCTCCTTCCGTAAC
TCAGTGGATGGGTCTAGAAGCCCTAAAGACCGACATGAGTTCTTACATTTCGGACTACAAAGAAAAAAGAGACTTTGTAT
TCGAATCTTTAAGAGATCGTTACGAAATTAACAAAAGCGAAGGCGCGTTTTACTTCTTCATTAAAATCAAAGAAAAAGAC
GACGACTTTATCGTTAGAGCCGTAAAAGAGAAAGAATTGATTCTGGTTCCGGGCTACATCTTTACCGAGTCCAAAAATTA
CATCCGTATCAGTTTCGCCTCCGAATGGGAAAATCTCAAGCGAGGAATCTCCGCCCTTGCCGAACTTGCCTGA

Upstream 100 bases:

>100_bases
TTGAATGGTTTGACGAACCAATCAAGTTTTCGAAAAGATTCTTTTTAGAAAGAAGTTTTGCAGTGGTTCTCCCGGATAGA
AATTGCGATAAGGGTTTAGT

Downstream 100 bases:

>100_bases
TTCTCCGAGTTTTTGGCTGTTCTTAAGTTTCGGAAGTTTCGGCGCCGCTTCCTTAGGAAGTTTTTACGTCACCCTAAGTT
TTCGAATTTTAGAATATTAC

Product: aspartate/tyrosine/aromatic aminotransferase

Products: NA

Alternate protein names: AspAT; Transaminase A [H]

Number of amino acids: Translated: 370; Mature: 369

Protein sequence:

>370_residues
MSQSTLEYILANRIQGLDTSAIRKAFELASTLKNPINLSIGQPHFPCPSNIIDAGCRALKDGKTAYTLTGGIPELKSALA
EKYKSGNGISYATPERILVTSGISSAFLLLFNALLNEGDECLVVTPHFLMYPAYIKIYGGKMYSIHESFEPEALKEFANR
KLKIIIYSSPSNPTGKILSRKQLEALADLAEKTGAYLISDEIYELFDYDKKFISVGSFYDKAITLSGFSKTYSMTGLRLS
SILAPEPITKVLTTLQQYTLVCAPSVTQWMGLEALKTDMSSYISDYKEKRDFVFESLRDRYEINKSEGAFYFFIKIKEKD
DDFIVRAVKEKELILVPGYIFTESKNYIRISFASEWENLKRGISALAELA

Sequences:

>Translated_370_residues
MSQSTLEYILANRIQGLDTSAIRKAFELASTLKNPINLSIGQPHFPCPSNIIDAGCRALKDGKTAYTLTGGIPELKSALA
EKYKSGNGISYATPERILVTSGISSAFLLLFNALLNEGDECLVVTPHFLMYPAYIKIYGGKMYSIHESFEPEALKEFANR
KLKIIIYSSPSNPTGKILSRKQLEALADLAEKTGAYLISDEIYELFDYDKKFISVGSFYDKAITLSGFSKTYSMTGLRLS
SILAPEPITKVLTTLQQYTLVCAPSVTQWMGLEALKTDMSSYISDYKEKRDFVFESLRDRYEINKSEGAFYFFIKIKEKD
DDFIVRAVKEKELILVPGYIFTESKNYIRISFASEWENLKRGISALAELA
>Mature_369_residues
SQSTLEYILANRIQGLDTSAIRKAFELASTLKNPINLSIGQPHFPCPSNIIDAGCRALKDGKTAYTLTGGIPELKSALAE
KYKSGNGISYATPERILVTSGISSAFLLLFNALLNEGDECLVVTPHFLMYPAYIKIYGGKMYSIHESFEPEALKEFANRK
LKIIIYSSPSNPTGKILSRKQLEALADLAEKTGAYLISDEIYELFDYDKKFISVGSFYDKAITLSGFSKTYSMTGLRLSS
ILAPEPITKVLTTLQQYTLVCAPSVTQWMGLEALKTDMSSYISDYKEKRDFVFESLRDRYEINKSEGAFYFFIKIKEKDD
DFIVRAVKEKELILVPGYIFTESKNYIRISFASEWENLKRGISALAELA

Specific function: Unknown

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI95147551, Length=406, Percent_Identity=25.8620689655172, Blast_Score=123, Evalue=2e-28,
Organism=Homo sapiens, GI169881279, Length=406, Percent_Identity=25.8620689655172, Blast_Score=123, Evalue=2e-28,
Organism=Homo sapiens, GI56713256, Length=280, Percent_Identity=30.7142857142857, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI56713254, Length=283, Percent_Identity=30.3886925795053, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI169881281, Length=231, Percent_Identity=25.1082251082251, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI4507369, Length=353, Percent_Identity=26.0623229461756, Blast_Score=74, Evalue=3e-13,
Organism=Escherichia coli, GI1786816, Length=356, Percent_Identity=24.7191011235955, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1788627, Length=396, Percent_Identity=23.7373737373737, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1788722, Length=361, Percent_Identity=23.2686980609418, Blast_Score=87, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI71994476, Length=391, Percent_Identity=25.8312020460358, Blast_Score=114, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI71994472, Length=391, Percent_Identity=25.8312020460358, Blast_Score=114, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17567369, Length=270, Percent_Identity=25.9259259259259, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17567663, Length=381, Percent_Identity=22.8346456692913, Blast_Score=73, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6322401, Length=325, Percent_Identity=24.3076923076923, Blast_Score=79, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6320317, Length=399, Percent_Identity=22.8070175438596, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28573069, Length=414, Percent_Identity=24.3961352657005, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24646114, Length=414, Percent_Identity=24.3961352657005, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI28573067, Length=414, Percent_Identity=24.3961352657005, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI28573065, Length=414, Percent_Identity=24.3961352657005, Blast_Score=107, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001176
- InterPro:   IPR004839
- InterPro:   IPR004838
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: =2.6.1.1 [H]

Molecular weight: Translated: 41503; Mature: 41372

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQSTLEYILANRIQGLDTSAIRKAFELASTLKNPINLSIGQPHFPCPSNIIDAGCRALK
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHC
DGKTAYTLTGGIPELKSALAEKYKSGNGISYATPERILVTSGISSAFLLLFNALLNEGDE
CCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCC
CLVVTPHFLMYPAYIKIYGGKMYSIHESFEPEALKEFANRKLKIIIYSSPSNPTGKILSR
EEEECCHHHHHCEEEEEECCEEEEECCCCCHHHHHHHHCCEEEEEEEECCCCCHHHHHHH
KQLEALADLAEKTGAYLISDEIYELFDYDKKFISVGSFYDKAITLSGFSKTYSMTGLRLS
HHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHCCHHHCEEEECCCCHHHHHCCHHHH
SILAPEPITKVLTTLQQYTLVCAPSVTQWMGLEALKTDMSSYISDYKEKRDFVFESLRDR
HHCCCCHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YEINKSEGAFYFFIKIKEKDDDFIVRAVKEKELILVPGYIFTESKNYIRISFASEWENLK
HCCCCCCCEEEEEEEEECCCCCHHHEEECCCCEEEECCEEEECCCCEEEEEEHHHHHHHH
RGISALAELA
HHHHHHHHCC
>Mature Secondary Structure 
SQSTLEYILANRIQGLDTSAIRKAFELASTLKNPINLSIGQPHFPCPSNIIDAGCRALK
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHC
DGKTAYTLTGGIPELKSALAEKYKSGNGISYATPERILVTSGISSAFLLLFNALLNEGDE
CCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCC
CLVVTPHFLMYPAYIKIYGGKMYSIHESFEPEALKEFANRKLKIIIYSSPSNPTGKILSR
EEEECCHHHHHCEEEEEECCEEEEECCCCCHHHHHHHHCCEEEEEEEECCCCCHHHHHHH
KQLEALADLAEKTGAYLISDEIYELFDYDKKFISVGSFYDKAITLSGFSKTYSMTGLRLS
HHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHCCHHHCEEEECCCCHHHHHCCHHHH
SILAPEPITKVLTTLQQYTLVCAPSVTQWMGLEALKTDMSSYISDYKEKRDFVFESLRDR
HHCCCCHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YEINKSEGAFYFFIKIKEKDDDFIVRAVKEKELILVPGYIFTESKNYIRISFASEWENLK
HCCCCCCCEEEEEEEEECCCCCHHHEEECCCCEEEECCEEEECCCCEEEEEEHHHHHHHH
RGISALAELA
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]