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The map label for this gene is atpH

Identifier: 116328616

GI number: 116328616

Start: 2307923

End: 2308483

Strand: Reverse

Name: atpH

Synonym: LBL_1974

Alternate gene names: 116328616

Gene position: 2308483-2307923 (Counterclockwise)

Preceding gene: 116328617

Following gene: 116328615

Centisome position: 63.87

GC content: 37.79

Gene sequence:

>561_bases
ATGAACGATTCCGGTGTTTCAAAGATATACGCGTCCGCACTTTTAGGAGCTGTAAATTCTCCGGAAGAAGTGGAACAAGA
ACTCGGCGATTTGGTTCAACTTCTTTTCAAAGAGGAAAAGATCAGAAACTTTTTTCTTTCTCCTACGGTATCCATCGAGG
AAAAAGAAAATATTTTGGAAAAAAATCTCCGGGGAAAAATTTTGGACGTAACTCTAAACTTTCTCGGAGTGCTTTTAAAC
AAAGGAAGATTTATCAACCTTCCCGAAATTCAAAAGCGTTTCACCGTAGAGTTGGATAAAAAAAAGGGAAGAGTTCGTGC
ACAAATAAAAAGTTATCCTTCTTTAGAACCTGCTCAAATCACGAAACTCGGATCCATCCTTTCTGAAAAATTCAAATCGG
AATTTATTCTAGAAGTTTCGGAAGATAAAACTCTTTTGGGCGGATTTGTAGTACAATTCAACGACTTAAAAATCGAAAAG
TCCATCGCTTCCCAGCTCGGGGAAATCAAGAAAGCCATGTTGGAAAAGAAATTACCGGTTGGAGCCGTCTATGAAAATTA
A

Upstream 100 bases:

>100_bases
ATTGCAGGGAAGGTTTTGGAAAAACAATTAAAAGCGGAAGACTACAAGGCTTTTATCGAAACCGAGTTGAATAAACTGGG
GAAACTGAGCGCATAAACCG

Downstream 100 bases:

>100_bases
GACAGACGAAATTACGTCCGTTCTCAAACAAGAAATTTTAAATTATAAAAAAGACCTCGGTGTTGATGAAGTCGGAACGG
TTTTAGAAATCGGAGACGGA

Product: F0F1 ATP synthase subunit delta

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F(1) sector subunit delta; F-type ATPase subunit delta; F-ATPase subunit delta

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MNDSGVSKIYASALLGAVNSPEEVEQELGDLVQLLFKEEKIRNFFLSPTVSIEEKENILEKNLRGKILDVTLNFLGVLLN
KGRFINLPEIQKRFTVELDKKKGRVRAQIKSYPSLEPAQITKLGSILSEKFKSEFILEVSEDKTLLGGFVVQFNDLKIEK
SIASQLGEIKKAMLEKKLPVGAVYEN

Sequences:

>Translated_186_residues
MNDSGVSKIYASALLGAVNSPEEVEQELGDLVQLLFKEEKIRNFFLSPTVSIEEKENILEKNLRGKILDVTLNFLGVLLN
KGRFINLPEIQKRFTVELDKKKGRVRAQIKSYPSLEPAQITKLGSILSEKFKSEFILEVSEDKTLLGGFVVQFNDLKIEK
SIASQLGEIKKAMLEKKLPVGAVYEN
>Mature_186_residues
MNDSGVSKIYASALLGAVNSPEEVEQELGDLVQLLFKEEKIRNFFLSPTVSIEEKENILEKNLRGKILDVTLNFLGVLLN
KGRFINLPEIQKRFTVELDKKKGRVRAQIKSYPSLEPAQITKLGSILSEKFKSEFILEVSEDKTLLGGFVVQFNDLKIEK
SIASQLGEIKKAMLEKKLPVGAVYEN

Specific function: This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction

COG id: COG0712

COG function: function code C; F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein)

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase delta chain family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPD_LEPBJ (Q04S15)

Other databases:

- EMBL:   CP000350
- RefSeq:   YP_801063.1
- ProteinModelPortal:   Q04S15
- SMR:   Q04S15
- STRING:   Q04S15
- GeneID:   4410486
- GenomeReviews:   CP000350_GR
- KEGG:   lbj:LBJ_1755
- eggNOG:   COG0712
- HOGENOM:   HBG530524
- OMA:   GEIISAY
- ProtClustDB:   PRK13434
- BioCyc:   LBOR355277:LBJ_1755-MONOMER
- HAMAP:   MF_01416
- InterPro:   IPR000711
- Gene3D:   G3DSA:1.10.520.20
- PANTHER:   PTHR11910
- PRINTS:   PR00125
- TIGRFAMs:   TIGR01145

Pfam domain/function: PF00213 OSCP; SSF47928 ATPsynt_OSCP

EC number: 3.6.3.14

Molecular weight: Translated: 20914; Mature: 20914

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: PS00389 ATPASE_DELTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDSGVSKIYASALLGAVNSPEEVEQELGDLVQLLFKEEKIRNFFLSPTVSIEEKENILE
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
KNLRGKILDVTLNFLGVLLNKGRFINLPEIQKRFTVELDKKKGRVRAQIKSYPSLEPAQI
HHCCCHHHHHHHHHHHHHHCCCCEECCHHHHHHHHEEECCCCCHHHHHHHCCCCCCHHHH
TKLGSILSEKFKSEFILEVSEDKTLLGGFVVQFNDLKIEKSIASQLGEIKKAMLEKKLPV
HHHHHHHHHHHHHHHEEEECCCCEEHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCC
GAVYEN
CCCCCC
>Mature Secondary Structure
MNDSGVSKIYASALLGAVNSPEEVEQELGDLVQLLFKEEKIRNFFLSPTVSIEEKENILE
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
KNLRGKILDVTLNFLGVLLNKGRFINLPEIQKRFTVELDKKKGRVRAQIKSYPSLEPAQI
HHCCCHHHHHHHHHHHHHHCCCCEECCHHHHHHHHEEECCCCCHHHHHHHCCCCCCHHHH
TKLGSILSEKFKSEFILEVSEDKTLLGGFVVQFNDLKIEKSIASQLGEIKKAMLEKKLPV
HHHHHHHHHHHHHHHEEEECCCCEEHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCC
GAVYEN
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA