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The map label for this gene is fliR [H]

Identifier: 116328496

GI number: 116328496

Start: 2148919

End: 2149698

Strand: Reverse

Name: fliR [H]

Synonym: LBL_1844

Alternate gene names: 116328496

Gene position: 2149698-2148919 (Counterclockwise)

Preceding gene: 116328497

Following gene: 116328495

Centisome position: 59.48

GC content: 42.05

Gene sequence:

>780_bases
ATGGAATACTTTATCAATCATTTTCAAACATTTCTTTTGATCCTTTCGAGATTGATGGGGTTGTTGTCCGTTGCTCCCGT
ATTCTCCTATCCGTCCATCAGCGTCCCTCAAAAGATGATTTTTTCGTTTTTGGTTTCCGTGATTTTATTTCCGGTGACCG
CCGGTTTTTTGCCTCCTGTTCCCGGGGATATGGGAAACTATGGACTTGTGGTTCTCGCGGAAGTTTTGATCGGAATGCTT
CTCGGTTTTTTGATTAGTTTGATCTTTGCGGCATTTCAAATGGCAGGAGAATTCTTTAACGTTCAATTGGGTTTTGGTTA
TGCGGAGATTTTGGATCCTGTAACCCAGACTAGTTTGCCTGTGATCAGTACTCTTAAAAATCTTCTGGGAATGCTTCTCT
TTTTAACTTTAGGCGCTTATCGAATCATGTTTGAAAGCCTTGCATATTCTTTCGAGAAAATTCAGGTTTTAAGATTTGTT
CCCGAAATTCAAAACGGAATTTACAGAGCGATGGAAGACGCGGTCGGAGCGATGTTTCTCGTCGCGTTTAAGTTGTCCCT
TCCCGTTCTTGGAATCATTTTGCTTGTGACTGTTTCCGAAGCTTTGATGGGGAAGGCCGCTCCACAACTTAATATCTTGC
AGTTATCCTTTCCGATCAAGGTTACGATCGGCTTGATCGTGATGATCTTTATTACCCCTTATTTGATTTCACAGATGGGG
GCGGCTTTTGATTTGTCCTTTGATAAAGTCGATCTGATGCTTCAAGGATGGCCGAAATGA

Upstream 100 bases:

>100_bases
TGTTTTTGTCGTGATTGTGATCTTTTCCTCTTGGATGATTCAGACGATGACGGATTATACTCGGAATTTATTTCTGATGA
TCGAGAAATTTTAGAATATT

Downstream 100 bases:

>100_bases
AAGGGACGCGTTGGTTGAAAAAATGGCTCAGGGAGGAAAGTTCCTCTTATGACGCGCCCCTTAGAAAGCGTCATGCTGCA
TTTTTTAAAGCTGAACAACG

Product: endoflagellar biosynthesis pathway protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MEYFINHFQTFLLILSRLMGLLSVAPVFSYPSISVPQKMIFSFLVSVILFPVTAGFLPPVPGDMGNYGLVVLAEVLIGML
LGFLISLIFAAFQMAGEFFNVQLGFGYAEILDPVTQTSLPVISTLKNLLGMLLFLTLGAYRIMFESLAYSFEKIQVLRFV
PEIQNGIYRAMEDAVGAMFLVAFKLSLPVLGIILLVTVSEALMGKAAPQLNILQLSFPIKVTIGLIVMIFITPYLISQMG
AAFDLSFDKVDLMLQGWPK

Sequences:

>Translated_259_residues
MEYFINHFQTFLLILSRLMGLLSVAPVFSYPSISVPQKMIFSFLVSVILFPVTAGFLPPVPGDMGNYGLVVLAEVLIGML
LGFLISLIFAAFQMAGEFFNVQLGFGYAEILDPVTQTSLPVISTLKNLLGMLLFLTLGAYRIMFESLAYSFEKIQVLRFV
PEIQNGIYRAMEDAVGAMFLVAFKLSLPVLGIILLVTVSEALMGKAAPQLNILQLSFPIKVTIGLIVMIFITPYLISQMG
AAFDLSFDKVDLMLQGWPK
>Mature_259_residues
MEYFINHFQTFLLILSRLMGLLSVAPVFSYPSISVPQKMIFSFLVSVILFPVTAGFLPPVPGDMGNYGLVVLAEVLIGML
LGFLISLIFAAFQMAGEFFNVQLGFGYAEILDPVTQTSLPVISTLKNLLGMLLFLTLGAYRIMFESLAYSFEKIQVLRFV
PEIQNGIYRAMEDAVGAMFLVAFKLSLPVLGIILLVTVSEALMGKAAPQLNILQLSFPIKVTIGLIVMIFITPYLISQMG
AAFDLSFDKVDLMLQGWPK

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=232, Percent_Identity=25.8620689655172, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 28572; Mature: 28572

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYFINHFQTFLLILSRLMGLLSVAPVFSYPSISVPQKMIFSFLVSVILFPVTAGFLPPV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
PGDMGNYGLVVLAEVLIGMLLGFLISLIFAAFQMAGEFFNVQLGFGYAEILDPVTQTSLP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHCCH
VISTLKNLLGMLLFLTLGAYRIMFESLAYSFEKIQVLRFVPEIQNGIYRAMEDAVGAMFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAFKLSLPVLGIILLVTVSEALMGKAAPQLNILQLSFPIKVTIGLIVMIFITPYLISQMG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHC
AAFDLSFDKVDLMLQGWPK
CHHCCCHHHHHHHHCCCCC
>Mature Secondary Structure
MEYFINHFQTFLLILSRLMGLLSVAPVFSYPSISVPQKMIFSFLVSVILFPVTAGFLPPV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
PGDMGNYGLVVLAEVLIGMLLGFLISLIFAAFQMAGEFFNVQLGFGYAEILDPVTQTSLP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHCCH
VISTLKNLLGMLLFLTLGAYRIMFESLAYSFEKIQVLRFVPEIQNGIYRAMEDAVGAMFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAFKLSLPVLGIILLVTVSEALMGKAAPQLNILQLSFPIKVTIGLIVMIFITPYLISQMG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHC
AAFDLSFDKVDLMLQGWPK
CHHCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8299954; 9384377 [H]