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The map label for this gene is ybeY [C]

Identifier: 116327964

GI number: 116327964

Start: 1475925

End: 1476356

Strand: Direct

Name: ybeY [C]

Synonym: LBL_1253

Alternate gene names: 116327964

Gene position: 1475925-1476356 (Clockwise)

Preceding gene: 116327963

Following gene: 116327965

Centisome position: 40.83

GC content: 42.59

Gene sequence:

>432_bases
GTGATTTTCAATTGTGGGATTCTTTTCCGTAAGGAACTAAAGGATTTTCCATGCGAACTCGGCCTTTTGCTCGTAGGCGA
TTCCGACATGAGGAAAATCAATCGTTTGCGTCGTGGAAAGGACAAAACGACGGATGTACTTTCTTTTCCGTTGGAGTTTG
ATAGTGCGCCTTTACAAAACGTCCTTCAAAAACGAACGGGTTTTGATTCGAATTCATTACCTCCTATCGCGTTAGGTGAA
ATTGTTATCTCCGTGGATACTCTTGAAAAACAAGCCGTAGAAATCGGACATTCCGTTAAAGACGAGTTTTACCGCCTTCT
GGTTCACGGTTTTTTACATCTCCTCGGTTATGATCATGAACGTGGAGAGGAAGAGGAACGGATCATGAAATTAAAGGAGG
ATGAATGTCTGGAAATTCTCCAGGAGCTTTGA

Upstream 100 bases:

>100_bases
ACAAGCAGACCAAGACCTCTTCGGGGAAAATAAACTGATTGCAGATTTAGTCTCCATTTCCAACGACTACGGGGACATTT
CCTGGTGGAACGAAACGGAG

Downstream 100 bases:

>100_bases
AAAAAATACGCGGAATTGTCTTGGAGTCCAGAACGATTCAAGAAGGAGACGCGCTCATTCGTCTTCTTCCCGAAATAGGG
CAGGTGGAGAATTTTCGCGT

Product: metal-dependent hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MIFNCGILFRKELKDFPCELGLLLVGDSDMRKINRLRRGKDKTTDVLSFPLEFDSAPLQNVLQKRTGFDSNSLPPIALGE
IVISVDTLEKQAVEIGHSVKDEFYRLLVHGFLHLLGYDHERGEEEERIMKLKEDECLEILQEL

Sequences:

>Translated_143_residues
MIFNCGILFRKELKDFPCELGLLLVGDSDMRKINRLRRGKDKTTDVLSFPLEFDSAPLQNVLQKRTGFDSNSLPPIALGE
IVISVDTLEKQAVEIGHSVKDEFYRLLVHGFLHLLGYDHERGEEEERIMKLKEDECLEILQEL
>Mature_143_residues
MIFNCGILFRKELKDFPCELGLLLVGDSDMRKINRLRRGKDKTTDVLSFPLEFDSAPLQNVLQKRTGFDSNSLPPIALGE
IVISVDTLEKQAVEIGHSVKDEFYRLLVHGFLHLLGYDHERGEEEERIMKLKEDECLEILQEL

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=105, Percent_Identity=35.2380952380952, Blast_Score=61, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_LEPBJ (Q04TG5)

Other databases:

- EMBL:   CP000350
- RefSeq:   YP_800563.1
- ProteinModelPortal:   Q04TG5
- SMR:   Q04TG5
- STRING:   Q04TG5
- GeneID:   4411147
- GenomeReviews:   CP000350_GR
- KEGG:   lbj:LBJ_1201
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   ELNDSEC
- PhylomeDB:   Q04TG5
- ProtClustDB:   CLSK574015
- BioCyc:   LBOR355277:LBJ_1201-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 16459; Mature: 16459

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFNCGILFRKELKDFPCELGLLLVGDSDMRKINRLRRGKDKTTDVLSFPLEFDSAPLQN
CEECCHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCCCHHHHCCCCCCCCCHHHH
VLQKRTGFDSNSLPPIALGEIVISVDTLEKQAVEIGHSVKDEFYRLLVHGFLHLLGYDHE
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
RGEEEERIMKLKEDECLEILQEL
CCCHHHHHHHCCHHHHHHHHHHC
>Mature Secondary Structure
MIFNCGILFRKELKDFPCELGLLLVGDSDMRKINRLRRGKDKTTDVLSFPLEFDSAPLQN
CEECCHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCCCHHHHCCCCCCCCCHHHH
VLQKRTGFDSNSLPPIALGEIVISVDTLEKQAVEIGHSVKDEFYRLLVHGFLHLLGYDHE
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
RGEEEERIMKLKEDECLEILQEL
CCCHHHHHHHCCHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA